diff options
Diffstat (limited to 'docs/articles')
| -rw-r--r-- | docs/articles/index.html | 2 | ||||
| -rw-r--r-- | docs/articles/web_only/mesotrione_parent_2023.html | 65 |
2 files changed, 33 insertions, 34 deletions
diff --git a/docs/articles/index.html b/docs/articles/index.html index b9afdae8..69d79223 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -7,7 +7,7 @@ <a class="navbar-brand me-2" href="../index.html">mkin</a> - <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="Released version">1.2.11</small> + <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="Released version">1.2.10</small> <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation"> diff --git a/docs/articles/web_only/mesotrione_parent_2023.html b/docs/articles/web_only/mesotrione_parent_2023.html index c9409d05..2fda7b31 100644 --- a/docs/articles/web_only/mesotrione_parent_2023.html +++ b/docs/articles/web_only/mesotrione_parent_2023.html @@ -20,7 +20,7 @@ <a class="navbar-brand me-2" href="../../index.html">mkin</a> - <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="Released version">1.2.11</small> + <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="Released version">1.2.10</small> <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation"> @@ -84,7 +84,7 @@ Ranke</h4> <h4 data-toc-skip class="date">Last change 12 September 2025 -(rebuilt 2025-09-12)</h4> +(rebuilt 2025-11-28)</h4> <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/web_only/mesotrione_parent_2023.rmd" class="external-link"><code>vignettes/web_only/mesotrione_parent_2023.rmd</code></a></small> <div class="d-none name"><code>mesotrione_parent_2023.rmd</code></div> @@ -103,7 +103,7 @@ parameters. Because in some other case studies, the SFORB parameterisation of biexponential decline has shown some advantages over the DFOP parameterisation, SFORB was included in the list of tested models as well.</p> -<p>The mkin package is used in version 1.2.11, which is contains the +<p>The mkin package is used in version 1.2.10, which is contains the functions that were used for the evaluations. The <code>saemix</code> package is used as a backend for fitting the NLHM, but is also loaded to make the convergence plot function available.</p> @@ -2429,7 +2429,7 @@ saemix version used for fitting: 3.4 mkin version used for pre-fitting: 1.2.11 R version used for fitting: 4.5.1 Date of fit: Fri Sep 12 22:15:01 2025 -Date of summary: Fri Sep 12 22:15:50 2025 +Date of summary: Fri Nov 28 09:15:24 2025 Equations: d_meso/dt = - k_meso * meso @@ -2506,7 +2506,7 @@ saemix version used for fitting: 3.4 mkin version used for pre-fitting: 1.2.11 R version used for fitting: 4.5.1 Date of fit: Fri Sep 12 22:15:02 2025 -Date of summary: Fri Sep 12 22:15:50 2025 +Date of summary: Fri Nov 28 09:15:24 2025 Equations: d_meso/dt = - (alpha/beta) * 1/((time/beta) + 1) * meso @@ -2589,7 +2589,7 @@ saemix version used for fitting: 3.4 mkin version used for pre-fitting: 1.2.11 R version used for fitting: 4.5.1 Date of fit: Fri Sep 12 22:15:02 2025 -Date of summary: Fri Sep 12 22:15:50 2025 +Date of summary: Fri Nov 28 09:15:24 2025 Equations: d_meso/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * @@ -2680,7 +2680,7 @@ saemix version used for fitting: 3.4 mkin version used for pre-fitting: 1.2.11 R version used for fitting: 4.5.1 Date of fit: Fri Sep 12 22:15:02 2025 -Date of summary: Fri Sep 12 22:15:50 2025 +Date of summary: Fri Nov 28 09:15:24 2025 Equations: d_meso_free/dt = - k_meso_free * meso_free - k_meso_free_bound * @@ -2787,7 +2787,7 @@ saemix version used for fitting: 3.4 mkin version used for pre-fitting: 1.2.11 R version used for fitting: 4.5.1 Date of fit: Fri Sep 12 22:15:03 2025 -Date of summary: Fri Sep 12 22:15:50 2025 +Date of summary: Fri Nov 28 09:15:24 2025 Equations: d_meso/dt = - ifelse(time <= tb, k1, k2) * meso @@ -2880,7 +2880,7 @@ saemix version used for fitting: 3.4 mkin version used for pre-fitting: 1.2.11 R version used for fitting: 4.5.1 Date of fit: Fri Sep 12 22:15:15 2025 -Date of summary: Fri Sep 12 22:15:50 2025 +Date of summary: Fri Nov 28 09:15:24 2025 Equations: d_meso/dt = - k_meso * meso @@ -2961,7 +2961,7 @@ saemix version used for fitting: 3.4 mkin version used for pre-fitting: 1.2.11 R version used for fitting: 4.5.1 Date of fit: Fri Sep 12 22:15:18 2025 -Date of summary: Fri Sep 12 22:15:50 2025 +Date of summary: Fri Nov 28 09:15:24 2025 Equations: d_meso/dt = - (alpha/beta) * 1/((time/beta) + 1) * meso @@ -3048,7 +3048,7 @@ saemix version used for fitting: 3.4 mkin version used for pre-fitting: 1.2.11 R version used for fitting: 4.5.1 Date of fit: Fri Sep 12 22:15:21 2025 -Date of summary: Fri Sep 12 22:15:50 2025 +Date of summary: Fri Nov 28 09:15:24 2025 Equations: d_meso/dt = - (alpha/beta) * 1/((time/beta) + 1) * meso @@ -3133,7 +3133,7 @@ saemix version used for fitting: 3.4 mkin version used for pre-fitting: 1.2.11 R version used for fitting: 4.5.1 Date of fit: Fri Sep 12 22:15:25 2025 -Date of summary: Fri Sep 12 22:15:50 2025 +Date of summary: Fri Nov 28 09:15:24 2025 Equations: d_meso/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * @@ -3228,7 +3228,7 @@ saemix version used for fitting: 3.4 mkin version used for pre-fitting: 1.2.11 R version used for fitting: 4.5.1 Date of fit: Fri Sep 12 22:15:30 2025 -Date of summary: Fri Sep 12 22:15:50 2025 +Date of summary: Fri Nov 28 09:15:24 2025 Equations: d_meso/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * @@ -3321,7 +3321,7 @@ saemix version used for fitting: 3.4 mkin version used for pre-fitting: 1.2.11 R version used for fitting: 4.5.1 Date of fit: Fri Sep 12 22:15:37 2025 -Date of summary: Fri Sep 12 22:15:50 2025 +Date of summary: Fri Nov 28 09:15:24 2025 Equations: d_meso/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * @@ -3412,7 +3412,7 @@ saemix version used for fitting: 3.4 mkin version used for pre-fitting: 1.2.11 R version used for fitting: 4.5.1 Date of fit: Fri Sep 12 22:15:41 2025 -Date of summary: Fri Sep 12 22:15:50 2025 +Date of summary: Fri Nov 28 09:15:24 2025 Equations: d_meso_free/dt = - k_meso_free * meso_free - k_meso_free_bound * @@ -3523,7 +3523,7 @@ saemix version used for fitting: 3.4 mkin version used for pre-fitting: 1.2.11 R version used for fitting: 4.5.1 Date of fit: Fri Sep 12 22:15:44 2025 -Date of summary: Fri Sep 12 22:15:50 2025 +Date of summary: Fri Nov 28 09:15:24 2025 Equations: d_meso_free/dt = - k_meso_free * meso_free - k_meso_free_bound * @@ -3630,7 +3630,7 @@ saemix version used for fitting: 3.4 mkin version used for pre-fitting: 1.2.11 R version used for fitting: 4.5.1 Date of fit: Fri Sep 12 22:15:48 2025 -Date of summary: Fri Sep 12 22:15:50 2025 +Date of summary: Fri Nov 28 09:15:25 2025 Equations: d_meso/dt = - ifelse(time <= tb, k1, k2) * meso @@ -3727,7 +3727,7 @@ saemix version used for fitting: 3.4 mkin version used for pre-fitting: 1.2.11 R version used for fitting: 4.5.1 Date of fit: Fri Sep 12 22:15:50 2025 -Date of summary: Fri Sep 12 22:15:50 2025 +Date of summary: Fri Nov 28 09:15:25 2025 Equations: d_meso/dt = - ifelse(time <= tb, k1, k2) * meso @@ -3819,7 +3819,7 @@ meso 14.69 82.45 24.82 14.69 29.29 <div class="section level3"> <h3 id="session-info">Session info<a class="anchor" aria-label="anchor" href="#session-info"></a> </h3> -<pre><code>R version 4.5.1 (2025-06-13) +<pre><code>R version 4.5.2 (2025-10-31) Platform: x86_64-pc-linux-gnu Running under: Debian GNU/Linux 13 (trixie) @@ -3843,23 +3843,22 @@ attached base packages: [8] base other attached packages: -[1] rmarkdown_2.29 nvimcom_0.9-167 saemix_3.4 npde_3.5 -[5] knitr_1.50 mkin_1.2.11 +[1] saemix_3.4 npde_3.5 knitr_1.50 mkin_1.2.10 loaded via a namespace (and not attached): - [1] gtable_0.3.6 jsonlite_2.0.0 dplyr_1.1.4 compiler_4.5.1 + [1] gtable_0.3.6 jsonlite_2.0.0 dplyr_1.1.4 compiler_4.5.2 [5] tidyselect_1.2.1 dichromat_2.0-0.1 gridExtra_2.3 jquerylib_0.1.4 - [9] systemfonts_1.2.3 scales_1.4.0 textshaping_1.0.1 readxl_1.4.5 -[13] yaml_2.3.10 fastmap_1.2.0 lattice_0.22-7 ggplot2_3.5.2 -[17] R6_2.6.1 generics_0.1.4 lmtest_0.9-40 MASS_7.3-65 -[21] htmlwidgets_1.6.4 tibble_3.3.0 desc_1.4.3 bslib_0.9.0 -[25] pillar_1.10.2 RColorBrewer_1.1-3 rlang_1.1.6 cachem_1.1.0 -[29] xfun_0.52 fs_1.6.6 sass_0.4.10 cli_3.6.5 -[33] pkgdown_2.1.3 magrittr_2.0.3 digest_0.6.37 grid_4.5.1 -[37] mclust_6.1.1 lifecycle_1.0.4 nlme_3.1-168 vctrs_0.6.5 -[41] evaluate_1.0.3 glue_1.8.0 cellranger_1.1.0 farver_2.1.2 -[45] codetools_0.2-20 ragg_1.4.0 zoo_1.8-14 colorspace_2.1-1 -[49] tools_4.5.1 pkgconfig_2.0.3 htmltools_0.5.8.1 </code></pre> + [9] systemfonts_1.2.3 scales_1.4.0 textshaping_1.0.1 yaml_2.3.10 +[13] fastmap_1.2.0 lattice_0.22-7 ggplot2_3.5.2 R6_2.6.1 +[17] generics_0.1.4 lmtest_0.9-40 MASS_7.3-65 htmlwidgets_1.6.4 +[21] tibble_3.3.0 desc_1.4.3 bslib_0.9.0 pillar_1.10.2 +[25] RColorBrewer_1.1-3 rlang_1.1.6 cachem_1.1.0 xfun_0.52 +[29] fs_1.6.6 sass_0.4.10 cli_3.6.5 pkgdown_2.1.3 +[33] magrittr_2.0.3 digest_0.6.37 grid_4.5.2 mclust_6.1.1 +[37] lifecycle_1.0.4 nlme_3.1-168 vctrs_0.6.5 evaluate_1.0.3 +[41] glue_1.8.0 farver_2.1.2 ragg_1.4.0 zoo_1.8-14 +[45] colorspace_2.1-1 rmarkdown_2.29 tools_4.5.2 pkgconfig_2.0.3 +[49] htmltools_0.5.8.1 </code></pre> </div> <div class="section level3"> <h3 id="hardware-info">Hardware info<a class="anchor" aria-label="anchor" href="#hardware-info"></a> |