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Diffstat (limited to 'docs/dev/articles/web_only/compiled_models.html')
| -rw-r--r-- | docs/dev/articles/web_only/compiled_models.html | 27 |
1 files changed, 13 insertions, 14 deletions
diff --git a/docs/dev/articles/web_only/compiled_models.html b/docs/dev/articles/web_only/compiled_models.html index a444f4bc..49a579fc 100644 --- a/docs/dev/articles/web_only/compiled_models.html +++ b/docs/dev/articles/web_only/compiled_models.html @@ -32,7 +32,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../../index.html">mkin</a> - <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">0.9.50.4</span> + <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.3.9000</span> </span> </div> @@ -81,7 +81,7 @@ <ul class="nav navbar-nav navbar-right"> <li> <a href="https://github.com/jranke/mkin/"> - <span class="fab fa fab fa-github fa-lg"></span> + <span class="fab fa-github fa-lg"></span> </a> </li> @@ -95,14 +95,13 @@ - </header><link href="compiled_models_files/anchor-sections-1.0/anchor-sections.css" rel="stylesheet"> -<script src="compiled_models_files/anchor-sections-1.0/anchor-sections.js"></script><div class="row"> + </header><script src="compiled_models_files/header-attrs-2.6/header-attrs.js"></script><script src="compiled_models_files/accessible-code-block-0.0.1/empty-anchor.js"></script><div class="row"> <div class="col-md-9 contents"> <div class="page-header toc-ignore"> <h1 data-toc-skip>Performance benefit by using compiled model definitions in mkin</h1> <h4 class="author">Johannes Ranke</h4> - <h4 class="date">2020-11-30</h4> + <h4 class="date">2021-02-15</h4> <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/master/vignettes/web_only/compiled_models.rmd"><code>vignettes/web_only/compiled_models.rmd</code></a></small> <div class="hidden name"><code>compiled_models.rmd</code></div> @@ -160,10 +159,10 @@ <span class="fu"><a href="https://rdrr.io/r/base/print.html">print</a></span><span class="op">(</span><span class="st">"R package rbenchmark is not available"</span><span class="op">)</span> <span class="op">}</span></code></pre></div> <pre><code>## test replications relative elapsed -## 4 analytical 1 1.000 0.187 -## 3 deSolve, compiled 1 1.807 0.338 -## 2 Eigenvalue based 1 2.032 0.380 -## 1 deSolve, not compiled 1 43.048 8.050</code></pre> +## 4 analytical 1 1.000 0.182 +## 3 deSolve, compiled 1 1.824 0.332 +## 2 Eigenvalue based 1 2.082 0.379 +## 1 deSolve, not compiled 1 46.181 8.405</code></pre> <p>We see that using the compiled model is by more than a factor of 10 faster than using deSolve without compiled code.</p> </div> <div id="model-without-analytical-solution" class="section level2"> @@ -190,13 +189,13 @@ <span class="op">}</span></code></pre></div> <pre><code>## Temporary DLL for differentials generated and loaded</code></pre> <pre><code>## test replications relative elapsed -## 2 deSolve, compiled 1 1.000 0.483 -## 1 deSolve, not compiled 1 29.969 14.475</code></pre> -<p>Here we get a performance benefit of a factor of 30 using the version of the differential equation model compiled from C code!</p> -<p>This vignette was built with mkin 0.9.50.4 on</p> +## 2 deSolve, compiled 1 1.000 0.541 +## 1 deSolve, not compiled 1 29.091 15.738</code></pre> +<p>Here we get a performance benefit of a factor of 29 using the version of the differential equation model compiled from C code!</p> +<p>This vignette was built with mkin 1.0.3.9000 on</p> <pre><code>## R version 4.0.3 (2020-10-10) ## Platform: x86_64-pc-linux-gnu (64-bit) -## Running under: Debian GNU/Linux 10 (buster)</code></pre> +## Running under: Debian GNU/Linux bullseye/sid</code></pre> <pre><code>## CPU model: AMD Ryzen 7 1700 Eight-Core Processor</code></pre> </div> </div> |