aboutsummaryrefslogtreecommitdiff
path: root/docs/dev/articles
diff options
context:
space:
mode:
Diffstat (limited to 'docs/dev/articles')
-rw-r--r--docs/dev/articles/FOCUS_L.html36
-rw-r--r--docs/dev/articles/web_only/benchmarks.html22
-rw-r--r--docs/dev/articles/web_only/dimethenamid_2018.html34
3 files changed, 46 insertions, 46 deletions
diff --git a/docs/dev/articles/FOCUS_L.html b/docs/dev/articles/FOCUS_L.html
index 610d1bdd..43ed0f69 100644
--- a/docs/dev/articles/FOCUS_L.html
+++ b/docs/dev/articles/FOCUS_L.html
@@ -106,7 +106,7 @@
<h1 data-toc-skip>Example evaluation of FOCUS Laboratory Data L1 to L3</h1>
<h4 data-toc-skip class="author">Johannes Ranke</h4>
- <h4 data-toc-skip class="date">Last change 18 May 2022 (rebuilt 2022-08-10)</h4>
+ <h4 data-toc-skip class="date">Last change 18 May 2022 (rebuilt 2022-09-16)</h4>
<small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/FOCUS_L.rmd" class="external-link"><code>vignettes/FOCUS_L.rmd</code></a></small>
<div class="hidden name"><code>FOCUS_L.rmd</code></div>
@@ -134,15 +134,15 @@
<span><span class="fu"><a href="https://rdrr.io/pkg/saemix/man/summary-methods.html" class="external-link">summary</a></span><span class="op">(</span><span class="va">m.L1.SFO</span><span class="op">)</span></span></code></pre></div>
<pre><code><span><span class="co">## mkin version used for fitting: 1.1.2 </span></span>
<span><span class="co">## R version used for fitting: 4.2.1 </span></span>
-<span><span class="co">## Date of fit: Wed Aug 10 15:28:18 2022 </span></span>
-<span><span class="co">## Date of summary: Wed Aug 10 15:28:18 2022 </span></span>
+<span><span class="co">## Date of fit: Fri Sep 16 10:31:35 2022 </span></span>
+<span><span class="co">## Date of summary: Fri Sep 16 10:31:35 2022 </span></span>
<span><span class="co">## </span></span>
<span><span class="co">## Equations:</span></span>
<span><span class="co">## d_parent/dt = - k_parent * parent</span></span>
<span><span class="co">## </span></span>
<span><span class="co">## Model predictions using solution type analytical </span></span>
<span><span class="co">## </span></span>
-<span><span class="co">## Fitted using 133 model solutions performed in 0.031 s</span></span>
+<span><span class="co">## Fitted using 133 model solutions performed in 0.032 s</span></span>
<span><span class="co">## </span></span>
<span><span class="co">## Error model: Constant variance </span></span>
<span><span class="co">## </span></span>
@@ -240,15 +240,15 @@
<span><span class="co">## doubtful</span></span></code></pre>
<pre><code><span><span class="co">## mkin version used for fitting: 1.1.2 </span></span>
<span><span class="co">## R version used for fitting: 4.2.1 </span></span>
-<span><span class="co">## Date of fit: Wed Aug 10 15:28:18 2022 </span></span>
-<span><span class="co">## Date of summary: Wed Aug 10 15:28:18 2022 </span></span>
+<span><span class="co">## Date of fit: Fri Sep 16 10:31:36 2022 </span></span>
+<span><span class="co">## Date of summary: Fri Sep 16 10:31:36 2022 </span></span>
<span><span class="co">## </span></span>
<span><span class="co">## Equations:</span></span>
<span><span class="co">## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent</span></span>
<span><span class="co">## </span></span>
<span><span class="co">## Model predictions using solution type analytical </span></span>
<span><span class="co">## </span></span>
-<span><span class="co">## Fitted using 369 model solutions performed in 0.082 s</span></span>
+<span><span class="co">## Fitted using 369 model solutions performed in 0.081 s</span></span>
<span><span class="co">## </span></span>
<span><span class="co">## Error model: Constant variance </span></span>
<span><span class="co">## </span></span>
@@ -352,15 +352,15 @@
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/pkg/saemix/man/summary-methods.html" class="external-link">summary</a></span><span class="op">(</span><span class="va">m.L2.FOMC</span>, data <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></span></code></pre></div>
<pre><code><span><span class="co">## mkin version used for fitting: 1.1.2 </span></span>
<span><span class="co">## R version used for fitting: 4.2.1 </span></span>
-<span><span class="co">## Date of fit: Wed Aug 10 15:28:19 2022 </span></span>
-<span><span class="co">## Date of summary: Wed Aug 10 15:28:19 2022 </span></span>
+<span><span class="co">## Date of fit: Fri Sep 16 10:31:36 2022 </span></span>
+<span><span class="co">## Date of summary: Fri Sep 16 10:31:36 2022 </span></span>
<span><span class="co">## </span></span>
<span><span class="co">## Equations:</span></span>
<span><span class="co">## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent</span></span>
<span><span class="co">## </span></span>
<span><span class="co">## Model predictions using solution type analytical </span></span>
<span><span class="co">## </span></span>
-<span><span class="co">## Fitted using 239 model solutions performed in 0.048 s</span></span>
+<span><span class="co">## Fitted using 239 model solutions performed in 0.049 s</span></span>
<span><span class="co">## </span></span>
<span><span class="co">## Error model: Constant variance </span></span>
<span><span class="co">## </span></span>
@@ -433,8 +433,8 @@
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/pkg/saemix/man/summary-methods.html" class="external-link">summary</a></span><span class="op">(</span><span class="va">m.L2.DFOP</span>, data <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></span></code></pre></div>
<pre><code><span><span class="co">## mkin version used for fitting: 1.1.2 </span></span>
<span><span class="co">## R version used for fitting: 4.2.1 </span></span>
-<span><span class="co">## Date of fit: Wed Aug 10 15:28:19 2022 </span></span>
-<span><span class="co">## Date of summary: Wed Aug 10 15:28:19 2022 </span></span>
+<span><span class="co">## Date of fit: Fri Sep 16 10:31:37 2022 </span></span>
+<span><span class="co">## Date of summary: Fri Sep 16 10:31:37 2022 </span></span>
<span><span class="co">## </span></span>
<span><span class="co">## Equations:</span></span>
<span><span class="co">## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *</span></span>
@@ -539,8 +539,8 @@
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/pkg/saemix/man/summary-methods.html" class="external-link">summary</a></span><span class="op">(</span><span class="va">mm.L3</span><span class="op">[[</span><span class="st">"DFOP"</span>, <span class="fl">1</span><span class="op">]</span><span class="op">]</span><span class="op">)</span></span></code></pre></div>
<pre><code><span><span class="co">## mkin version used for fitting: 1.1.2 </span></span>
<span><span class="co">## R version used for fitting: 4.2.1 </span></span>
-<span><span class="co">## Date of fit: Wed Aug 10 15:28:20 2022 </span></span>
-<span><span class="co">## Date of summary: Wed Aug 10 15:28:20 2022 </span></span>
+<span><span class="co">## Date of fit: Fri Sep 16 10:31:37 2022 </span></span>
+<span><span class="co">## Date of summary: Fri Sep 16 10:31:38 2022 </span></span>
<span><span class="co">## </span></span>
<span><span class="co">## Equations:</span></span>
<span><span class="co">## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *</span></span>
@@ -652,8 +652,8 @@
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/pkg/saemix/man/summary-methods.html" class="external-link">summary</a></span><span class="op">(</span><span class="va">mm.L4</span><span class="op">[[</span><span class="st">"SFO"</span>, <span class="fl">1</span><span class="op">]</span><span class="op">]</span>, data <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></span></code></pre></div>
<pre><code><span><span class="co">## mkin version used for fitting: 1.1.2 </span></span>
<span><span class="co">## R version used for fitting: 4.2.1 </span></span>
-<span><span class="co">## Date of fit: Wed Aug 10 15:28:21 2022 </span></span>
-<span><span class="co">## Date of summary: Wed Aug 10 15:28:21 2022 </span></span>
+<span><span class="co">## Date of fit: Fri Sep 16 10:31:38 2022 </span></span>
+<span><span class="co">## Date of summary: Fri Sep 16 10:31:38 2022 </span></span>
<span><span class="co">## </span></span>
<span><span class="co">## Equations:</span></span>
<span><span class="co">## d_parent/dt = - k_parent * parent</span></span>
@@ -717,8 +717,8 @@
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/pkg/saemix/man/summary-methods.html" class="external-link">summary</a></span><span class="op">(</span><span class="va">mm.L4</span><span class="op">[[</span><span class="st">"FOMC"</span>, <span class="fl">1</span><span class="op">]</span><span class="op">]</span>, data <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></span></code></pre></div>
<pre><code><span><span class="co">## mkin version used for fitting: 1.1.2 </span></span>
<span><span class="co">## R version used for fitting: 4.2.1 </span></span>
-<span><span class="co">## Date of fit: Wed Aug 10 15:28:21 2022 </span></span>
-<span><span class="co">## Date of summary: Wed Aug 10 15:28:21 2022 </span></span>
+<span><span class="co">## Date of fit: Fri Sep 16 10:31:38 2022 </span></span>
+<span><span class="co">## Date of summary: Fri Sep 16 10:31:38 2022 </span></span>
<span><span class="co">## </span></span>
<span><span class="co">## Equations:</span></span>
<span><span class="co">## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent</span></span>
diff --git a/docs/dev/articles/web_only/benchmarks.html b/docs/dev/articles/web_only/benchmarks.html
index 3dbf2881..e5bc5a21 100644
--- a/docs/dev/articles/web_only/benchmarks.html
+++ b/docs/dev/articles/web_only/benchmarks.html
@@ -106,7 +106,7 @@
<h1 data-toc-skip>Benchmark timings for mkin</h1>
<h4 data-toc-skip class="author">Johannes Ranke</h4>
- <h4 data-toc-skip class="date">Last change 14 July 2022 (rebuilt 2022-08-10)</h4>
+ <h4 data-toc-skip class="date">Last change 14 July 2022 (rebuilt 2022-09-16)</h4>
<small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/web_only/benchmarks.rmd" class="external-link"><code>vignettes/web_only/benchmarks.rmd</code></a></small>
<div class="hidden name"><code>benchmarks.rmd</code></div>
@@ -337,8 +337,8 @@
<td align="left">Ryzen 7 1700</td>
<td align="left">4.2.1</td>
<td align="left">1.1.2</td>
-<td align="right">1.940</td>
-<td align="right">3.619</td>
+<td align="right">1.957</td>
+<td align="right">3.633</td>
</tr>
</tbody>
</table>
@@ -507,9 +507,9 @@
<td align="left">Ryzen 7 1700</td>
<td align="left">4.2.1</td>
<td align="left">1.1.2</td>
-<td align="right">1.490</td>
-<td align="right">6.035</td>
-<td align="right">2.799</td>
+<td align="right">1.503</td>
+<td align="right">6.147</td>
+<td align="right">2.803</td>
</tr>
</tbody>
</table>
@@ -729,12 +729,12 @@
<td align="left">Ryzen 7 1700</td>
<td align="left">4.2.1</td>
<td align="left">1.1.2</td>
-<td align="right">0.857</td>
+<td align="right">0.861</td>
<td align="right">1.295</td>
-<td align="right">1.483</td>
-<td align="right">2.989</td>
-<td align="right">1.919</td>
-<td align="right">2.766</td>
+<td align="right">1.507</td>
+<td align="right">3.102</td>
+<td align="right">1.961</td>
+<td align="right">2.852</td>
</tr>
</tbody>
</table>
diff --git a/docs/dev/articles/web_only/dimethenamid_2018.html b/docs/dev/articles/web_only/dimethenamid_2018.html
index 81b15cb9..60f1ab5a 100644
--- a/docs/dev/articles/web_only/dimethenamid_2018.html
+++ b/docs/dev/articles/web_only/dimethenamid_2018.html
@@ -106,7 +106,7 @@
<h1 data-toc-skip>Example evaluations of the dimethenamid data from 2018</h1>
<h4 data-toc-skip class="author">Johannes Ranke</h4>
- <h4 data-toc-skip class="date">Last change 1 July 2022, built on 10 Aug 2022</h4>
+ <h4 data-toc-skip class="date">Last change 1 July 2022, built on 16 Sep 2022</h4>
<small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/web_only/dimethenamid_2018.rmd" class="external-link"><code>vignettes/web_only/dimethenamid_2018.rmd</code></a></small>
<div class="hidden name"><code>dimethenamid_2018.rmd</code></div>
@@ -457,24 +457,24 @@ attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
-[1] saemix_3.1 npde_3.2 nlme_3.1-158 mkin_1.1.2 knitr_1.39
+[1] nlme_3.1-158 mkin_1.1.2 knitr_1.39
loaded via a namespace (and not attached):
- [1] deSolve_1.33 zoo_1.8-10 tidyselect_1.1.2 xfun_0.31
- [5] bslib_0.4.0 purrr_0.3.4 lattice_0.20-45 colorspace_2.0-3
- [9] vctrs_0.4.1 generics_0.1.3 htmltools_0.5.3 yaml_2.3.5
-[13] utf8_1.2.2 rlang_1.0.4 pkgdown_2.0.6 jquerylib_0.1.4
-[17] pillar_1.8.0 glue_1.6.2 DBI_1.1.3 lifecycle_1.0.1
-[21] stringr_1.4.0 munsell_0.5.0 gtable_0.3.0 ragg_1.2.2
-[25] codetools_0.2-18 memoise_2.0.1 evaluate_0.15 fastmap_1.1.0
-[29] lmtest_0.9-40 parallel_4.2.1 fansi_1.0.3 highr_0.9
-[33] scales_1.2.0 cachem_1.0.6 desc_1.4.1 jsonlite_1.8.0
-[37] systemfonts_1.0.4 fs_1.5.2 textshaping_0.3.6 gridExtra_2.3
-[41] ggplot2_3.3.6 digest_0.6.29 stringi_1.7.8 dplyr_1.0.9
-[45] grid_4.2.1 rprojroot_2.0.3 cli_3.3.0 tools_4.2.1
-[49] magrittr_2.0.3 sass_0.4.2 tibble_3.1.8 pkgconfig_2.0.3
-[53] assertthat_0.2.1 rmarkdown_2.14.3 R6_2.5.1 mclust_5.4.10
-[57] compiler_4.2.1 </code></pre>
+ [1] deSolve_1.33 zoo_1.8-10 tidyselect_1.1.2 xfun_0.31
+ [5] bslib_0.4.0 purrr_0.3.4 lattice_0.20-45 colorspace_2.0-3
+ [9] vctrs_0.4.1 generics_0.1.3 htmltools_0.5.3 yaml_2.3.5
+[13] utf8_1.2.2 rlang_1.0.4 pkgdown_2.0.6 saemix_3.1
+[17] jquerylib_0.1.4 pillar_1.8.0 glue_1.6.2 DBI_1.1.3
+[21] lifecycle_1.0.1 stringr_1.4.0 munsell_0.5.0 gtable_0.3.0
+[25] ragg_1.2.2 memoise_2.0.1 evaluate_0.15 npde_3.2
+[29] fastmap_1.1.0 lmtest_0.9-40 parallel_4.2.1 fansi_1.0.3
+[33] highr_0.9 KernSmooth_2.23-20 scales_1.2.0 cachem_1.0.6
+[37] desc_1.4.1 jsonlite_1.8.0 systemfonts_1.0.4 fs_1.5.2
+[41] textshaping_0.3.6 gridExtra_2.3 ggplot2_3.3.6 digest_0.6.29
+[45] stringi_1.7.8 dplyr_1.0.9 grid_4.2.1 rprojroot_2.0.3
+[49] cli_3.3.0 tools_4.2.1 magrittr_2.0.3 sass_0.4.2
+[53] tibble_3.1.8 pkgconfig_2.0.3 assertthat_0.2.1 rmarkdown_2.14.3
+[57] mclust_5.4.10 R6_2.5.1 compiler_4.2.1 </code></pre>
</div>
<div class="section level2">
<h2 id="references">References<a class="anchor" aria-label="anchor" href="#references"></a>

Contact - Imprint