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path: root/docs/dev/articles
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context:
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Diffstat (limited to 'docs/dev/articles')
-rw-r--r--docs/dev/articles/index.html2
-rw-r--r--docs/dev/articles/prebuilt/2022_cyan_pathway.html116
-rw-r--r--docs/dev/articles/prebuilt/2022_dmta_parent.html41
-rw-r--r--docs/dev/articles/prebuilt/2022_dmta_pathway.html41
-rw-r--r--docs/dev/articles/web_only/benchmarks.html173
-rw-r--r--docs/dev/articles/web_only/saem_benchmarks.html140
6 files changed, 375 insertions, 138 deletions
diff --git a/docs/dev/articles/index.html b/docs/dev/articles/index.html
index b9571a60..2aacc53a 100644
--- a/docs/dev/articles/index.html
+++ b/docs/dev/articles/index.html
@@ -17,7 +17,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.2.2</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.2.3</span>
</span>
</div>
diff --git a/docs/dev/articles/prebuilt/2022_cyan_pathway.html b/docs/dev/articles/prebuilt/2022_cyan_pathway.html
index 87d4ca4a..1095dd28 100644
--- a/docs/dev/articles/prebuilt/2022_cyan_pathway.html
+++ b/docs/dev/articles/prebuilt/2022_cyan_pathway.html
@@ -34,14 +34,14 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../../index.html">mkin</a>
- <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.2.2</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.2.3</span>
</span>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li>
- <a href="../../reference/index.html">Functions and data</a>
+ <a href="../../reference/index.html">Reference</a>
</li>
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
@@ -53,6 +53,9 @@
<li>
<a href="../../articles/mkin.html">Introduction to mkin</a>
</li>
+ <li class="divider">
+ </li>
+<li class="dropdown-header">Example evaluations with (generalised) nonlinear least squares</li>
<li>
<a href="../../articles/FOCUS_D.html">Example evaluation of FOCUS Example Dataset D</a>
</li>
@@ -60,22 +63,31 @@
<a href="../../articles/FOCUS_L.html">Example evaluation of FOCUS Laboratory Data L1 to L3</a>
</li>
<li>
- <a href="../../articles/web_only/dimethenamid_2018.html">Example evaluations of dimethenamid data from 2018 with nonlinear mixed-effects models</a>
+ <a href="../../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
+ </li>
+ <li class="divider">
</li>
+<li class="dropdown-header">Example evaluations with hierarchical models (nonlinear mixed-effects models)</li>
<li>
- <a href="../../articles/web_only/multistart.html">Short demo of the multistart method</a>
+ <a href="../../articles/prebuilt/2022_dmta_parent.html">Testing hierarchical parent degradation kinetics with residue data on dimethenamid and dimethenamid-P</a>
</li>
<li>
- <a href="../../articles/web_only/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a>
+ <a href="../../articles/prebuilt/2022_dmta_pathway.html">Testing hierarchical pathway kinetics with residue data on dimethenamid and dimethenamid-P</a>
</li>
<li>
- <a href="../../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
+ <a href="../../articles/prebuilt/2022_cyan_pathway.html">Testing hierarchical pathway kinetics with residue data on cyantraniliprole</a>
</li>
<li>
- <a href="../../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
+ <a href="../../articles/web_only/dimethenamid_2018.html">Comparison of saemix and nlme evaluations of dimethenamid data from 2018</a>
</li>
<li>
- <a href="../../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ <a href="../../articles/web_only/multistart.html">Short demo of the multistart method</a>
+ </li>
+ <li class="divider">
+ </li>
+<li class="dropdown-header">Performance</li>
+ <li>
+ <a href="../../articles/web_only/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a>
</li>
<li>
<a href="../../articles/web_only/benchmarks.html">Benchmark timings for mkin</a>
@@ -83,6 +95,15 @@
<li>
<a href="../../articles/web_only/saem_benchmarks.html">Benchmark timings for saem.mmkin</a>
</li>
+ <li class="divider">
+ </li>
+<li class="dropdown-header">Miscellaneous</li>
+ <li>
+ <a href="../../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
+ </li>
+ <li>
+ <a href="../../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
@@ -115,7 +136,7 @@ residue data on cyantraniliprole</h1>
Ranke</h4>
<h4 data-toc-skip class="date">Last change on 6 January
-2023, last compiled on 28 Januar 2023</h4>
+2023, last compiled on 17 Februar 2023</h4>
<small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/prebuilt/2022_cyan_pathway.rmd" class="external-link"><code>vignettes/prebuilt/2022_cyan_pathway.rmd</code></a></small>
<div class="hidden name"><code>2022_cyan_pathway.rmd</code></div>
@@ -135,7 +156,7 @@ be fitted with the mkin package.</p>
173340 (Application of nonlinear hierarchical models to the kinetic
evaluation of chemical degradation data) of the German Environment
Agency carried out in 2022 and 2023.</p>
-<p>The mkin package is used in version 1.2.2 which is currently under
+<p>The mkin package is used in version 1.2.3 which is currently under
development. The newly introduced functionality that is used here is a
simplification of excluding random effects for a set of fits based on a
related set of fits with a reduced model, and the documentation of the
@@ -2185,7 +2206,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:07:38 2023
-Date of summary: Sat Jan 28 11:22:29 2023
+Date of summary: Fri Feb 17 22:24:33 2023
Equations:
d_cyan/dt = - k_cyan * cyan
@@ -2313,7 +2334,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:08:17 2023
-Date of summary: Sat Jan 28 11:22:29 2023
+Date of summary: Fri Feb 17 22:24:33 2023
Equations:
d_cyan/dt = - k_cyan * cyan
@@ -2443,7 +2464,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:09:12 2023
-Date of summary: Sat Jan 28 11:22:29 2023
+Date of summary: Fri Feb 17 22:24:33 2023
Equations:
d_cyan/dt = - (alpha/beta) * 1/((time/beta) + 1) * cyan
@@ -2588,7 +2609,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:09:18 2023
-Date of summary: Sat Jan 28 11:22:29 2023
+Date of summary: Fri Feb 17 22:24:33 2023
Equations:
d_cyan/dt = - (alpha/beta) * 1/((time/beta) + 1) * cyan
@@ -2726,7 +2747,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:10:30 2023
-Date of summary: Sat Jan 28 11:22:29 2023
+Date of summary: Fri Feb 17 22:24:33 2023
Equations:
d_cyan/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -2872,7 +2893,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:16:28 2023
-Date of summary: Sat Jan 28 11:22:29 2023
+Date of summary: Fri Feb 17 22:24:33 2023
Equations:
d_cyan/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -3018,7 +3039,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:10:49 2023
-Date of summary: Sat Jan 28 11:22:29 2023
+Date of summary: Fri Feb 17 22:24:33 2023
Equations:
d_cyan_free/dt = - k_cyan_free * cyan_free - k_cyan_free_bound *
@@ -3183,7 +3204,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:17:00 2023
-Date of summary: Sat Jan 28 11:22:29 2023
+Date of summary: Fri Feb 17 22:24:33 2023
Equations:
d_cyan_free/dt = - k_cyan_free * cyan_free - k_cyan_free_bound *
@@ -3348,7 +3369,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:11:04 2023
-Date of summary: Sat Jan 28 11:22:29 2023
+Date of summary: Fri Feb 17 22:24:33 2023
Equations:
d_cyan/dt = - ifelse(time &lt;= tb, k1, k2) * cyan
@@ -3490,7 +3511,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:11:24 2023
-Date of summary: Sat Jan 28 11:22:29 2023
+Date of summary: Fri Feb 17 22:24:33 2023
Equations:
d_cyan/dt = - ifelse(time &lt;= tb, k1, k2) * cyan
@@ -3638,7 +3659,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:34:28 2023
-Date of summary: Sat Jan 28 11:22:29 2023
+Date of summary: Fri Feb 17 22:24:33 2023
Equations:
d_cyan/dt = - (alpha/beta) * 1/((time/beta) + 1) * cyan
@@ -3802,7 +3823,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:37:36 2023
-Date of summary: Sat Jan 28 11:22:29 2023
+Date of summary: Fri Feb 17 22:24:33 2023
Equations:
d_cyan/dt = - (alpha/beta) * 1/((time/beta) + 1) * cyan
@@ -3948,7 +3969,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:38:34 2023
-Date of summary: Sat Jan 28 11:22:29 2023
+Date of summary: Fri Feb 17 22:24:33 2023
Equations:
d_cyan/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -4139,7 +4160,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:45:32 2023
-Date of summary: Sat Jan 28 11:22:29 2023
+Date of summary: Fri Feb 17 22:24:33 2023
Equations:
d_cyan/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -4330,7 +4351,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:38:37 2023
-Date of summary: Sat Jan 28 11:22:29 2023
+Date of summary: Fri Feb 17 22:24:33 2023
Equations:
d_cyan_free/dt = - k_cyan_free * cyan_free - k_cyan_free_bound *
@@ -4526,7 +4547,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 10:46:02 2023
-Date of summary: Sat Jan 28 11:22:29 2023
+Date of summary: Fri Feb 17 22:24:33 2023
Equations:
d_cyan_free/dt = - k_cyan_free * cyan_free - k_cyan_free_bound *
@@ -4727,7 +4748,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 11:18:41 2023
-Date of summary: Sat Jan 28 11:22:29 2023
+Date of summary: Fri Feb 17 22:24:33 2023
Equations:
d_cyan/dt = - (alpha/beta) * 1/((time/beta) + 1) * cyan
@@ -4870,7 +4891,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 11:16:32 2023
-Date of summary: Sat Jan 28 11:22:29 2023
+Date of summary: Fri Feb 17 22:24:33 2023
Equations:
d_cyan/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -5036,7 +5057,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 11:22:28 2023
-Date of summary: Sat Jan 28 11:22:29 2023
+Date of summary: Fri Feb 17 22:24:33 2023
Equations:
d_cyan/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -5202,7 +5223,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 11:17:37 2023
-Date of summary: Sat Jan 28 11:22:29 2023
+Date of summary: Fri Feb 17 22:24:33 2023
Equations:
d_cyan_free/dt = - k_cyan_free * cyan_free - k_cyan_free_bound *
@@ -5373,7 +5394,7 @@ saemix version used for fitting: 3.2
mkin version used for pre-fitting: 1.2.2
R version used for fitting: 4.2.2
Date of fit: Sat Jan 28 11:21:01 2023
-Date of summary: Sat Jan 28 11:22:29 2023
+Date of summary: Fri Feb 17 22:24:33 2023
Equations:
d_cyan_free/dt = - k_cyan_free * cyan_free - k_cyan_free_bound *
@@ -5561,26 +5582,23 @@ attached base packages:
[8] base
other attached packages:
-[1] saemix_3.2 npde_3.3 knitr_1.41 mkin_1.2.2
+[1] saemix_3.2 npde_3.3 knitr_1.41 mkin_1.2.3
loaded via a namespace (and not attached):
- [1] mclust_6.0.0 lattice_0.20-45 prettyunits_1.1.1 ps_1.7.2
- [5] zoo_1.8-11 assertthat_0.2.1 rprojroot_2.0.3 digest_0.6.31
- [9] lmtest_0.9-40 utf8_1.2.2 R6_2.5.1 cellranger_1.1.0
-[13] evaluate_0.19 ggplot2_3.4.0 highr_0.9 pillar_1.8.1
-[17] rlang_1.0.6 readxl_1.4.1 callr_3.7.3 jquerylib_0.1.4
-[21] rmarkdown_2.19 pkgdown_2.0.7 textshaping_0.3.6 desc_1.4.2
-[25] stringr_1.5.0 munsell_0.5.0 compiler_4.2.2 xfun_0.35
-[29] pkgconfig_2.0.3 systemfonts_1.0.4 pkgbuild_1.4.0 htmltools_0.5.4
-[33] tidyselect_1.2.0 tibble_3.1.8 gridExtra_2.3 codetools_0.2-18
-[37] fansi_1.0.3 crayon_1.5.2 dplyr_1.0.10 grid_4.2.2
-[41] nlme_3.1-161 jsonlite_1.8.4 gtable_0.3.1 lifecycle_1.0.3
-[45] DBI_1.1.3 magrittr_2.0.3 scales_1.2.1 cli_3.5.0
-[49] stringi_1.7.8 cachem_1.0.6 fs_1.5.2 bslib_0.4.2
-[53] ragg_1.2.4 generics_0.1.3 vctrs_0.5.1 deSolve_1.34
-[57] tools_4.2.2 glue_1.6.2 purrr_1.0.0 processx_3.8.0
-[61] fastmap_1.1.0 yaml_2.3.6 inline_0.3.19 colorspace_2.0-3
-[65] memoise_2.0.1 sass_0.4.4 </code></pre>
+ [1] pillar_1.8.1 bslib_0.4.2 compiler_4.2.2 jquerylib_0.1.4
+ [5] tools_4.2.2 mclust_6.0.0 digest_0.6.31 tibble_3.1.8
+ [9] jsonlite_1.8.4 evaluate_0.19 memoise_2.0.1 lifecycle_1.0.3
+[13] nlme_3.1-162 gtable_0.3.1 lattice_0.20-45 pkgconfig_2.0.3
+[17] rlang_1.0.6 DBI_1.1.3 cli_3.5.0 yaml_2.3.6
+[21] pkgdown_2.0.7 xfun_0.35 fastmap_1.1.0 gridExtra_2.3
+[25] dplyr_1.0.10 stringr_1.5.0 generics_0.1.3 desc_1.4.2
+[29] fs_1.5.2 vctrs_0.5.1 sass_0.4.4 systemfonts_1.0.4
+[33] tidyselect_1.2.0 rprojroot_2.0.3 lmtest_0.9-40 grid_4.2.2
+[37] inline_0.3.19 glue_1.6.2 R6_2.5.1 textshaping_0.3.6
+[41] fansi_1.0.3 rmarkdown_2.19 purrr_1.0.0 ggplot2_3.4.0
+[45] magrittr_2.0.3 scales_1.2.1 htmltools_0.5.4 assertthat_0.2.1
+[49] colorspace_2.0-3 ragg_1.2.4 utf8_1.2.2 stringi_1.7.8
+[53] munsell_0.5.0 cachem_1.0.6 zoo_1.8-11 </code></pre>
</div>
<div class="section level3">
<h3 id="hardware-info">Hardware info<a class="anchor" aria-label="anchor" href="#hardware-info"></a>
diff --git a/docs/dev/articles/prebuilt/2022_dmta_parent.html b/docs/dev/articles/prebuilt/2022_dmta_parent.html
index 89c9bfd8..2ff966b4 100644
--- a/docs/dev/articles/prebuilt/2022_dmta_parent.html
+++ b/docs/dev/articles/prebuilt/2022_dmta_parent.html
@@ -34,14 +34,14 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../../index.html">mkin</a>
- <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.2.2</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.2.3</span>
</span>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li>
- <a href="../../reference/index.html">Functions and data</a>
+ <a href="../../reference/index.html">Reference</a>
</li>
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
@@ -53,6 +53,9 @@
<li>
<a href="../../articles/mkin.html">Introduction to mkin</a>
</li>
+ <li class="divider">
+ </li>
+<li class="dropdown-header">Example evaluations with (generalised) nonlinear least squares</li>
<li>
<a href="../../articles/FOCUS_D.html">Example evaluation of FOCUS Example Dataset D</a>
</li>
@@ -60,22 +63,31 @@
<a href="../../articles/FOCUS_L.html">Example evaluation of FOCUS Laboratory Data L1 to L3</a>
</li>
<li>
- <a href="../../articles/web_only/dimethenamid_2018.html">Example evaluations of dimethenamid data from 2018 with nonlinear mixed-effects models</a>
+ <a href="../../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
+ </li>
+ <li class="divider">
</li>
+<li class="dropdown-header">Example evaluations with hierarchical models (nonlinear mixed-effects models)</li>
<li>
- <a href="../../articles/web_only/multistart.html">Short demo of the multistart method</a>
+ <a href="../../articles/prebuilt/2022_dmta_parent.html">Testing hierarchical parent degradation kinetics with residue data on dimethenamid and dimethenamid-P</a>
</li>
<li>
- <a href="../../articles/web_only/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a>
+ <a href="../../articles/prebuilt/2022_dmta_pathway.html">Testing hierarchical pathway kinetics with residue data on dimethenamid and dimethenamid-P</a>
</li>
<li>
- <a href="../../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
+ <a href="../../articles/prebuilt/2022_cyan_pathway.html">Testing hierarchical pathway kinetics with residue data on cyantraniliprole</a>
</li>
<li>
- <a href="../../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
+ <a href="../../articles/web_only/dimethenamid_2018.html">Comparison of saemix and nlme evaluations of dimethenamid data from 2018</a>
</li>
<li>
- <a href="../../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ <a href="../../articles/web_only/multistart.html">Short demo of the multistart method</a>
+ </li>
+ <li class="divider">
+ </li>
+<li class="dropdown-header">Performance</li>
+ <li>
+ <a href="../../articles/web_only/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a>
</li>
<li>
<a href="../../articles/web_only/benchmarks.html">Benchmark timings for mkin</a>
@@ -83,6 +95,15 @@
<li>
<a href="../../articles/web_only/saem_benchmarks.html">Benchmark timings for saem.mmkin</a>
</li>
+ <li class="divider">
+ </li>
+<li class="dropdown-header">Miscellaneous</li>
+ <li>
+ <a href="../../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
+ </li>
+ <li>
+ <a href="../../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
@@ -115,7 +136,7 @@ with residue data on dimethenamid and dimethenamid-P</h1>
Ranke</h4>
<h4 data-toc-skip class="date">Last change on 5 January
-2023, last compiled on 28 Januar 2023</h4>
+2023, last compiled on 17 Februar 2023</h4>
<small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/prebuilt/2022_dmta_parent.rmd" class="external-link"><code>vignettes/prebuilt/2022_dmta_parent.rmd</code></a></small>
<div class="hidden name"><code>2022_dmta_parent.rmd</code></div>
@@ -134,7 +155,7 @@ FOMC, DFOP and HS can be fitted with the mkin package.</p>
173340 (Application of nonlinear hierarchical models to the kinetic
evaluation of chemical degradation data) of the German Environment
Agency carried out in 2022 and 2023.</p>
-<p>The mkin package is used in version 1.2.2. It contains the test data
+<p>The mkin package is used in version 1.2.3. It contains the test data
and the functions used in the evaluations. The <code>saemix</code>
package is used as a backend for fitting the NLHM, but is also loaded to
make the convergence plot function available.</p>
diff --git a/docs/dev/articles/prebuilt/2022_dmta_pathway.html b/docs/dev/articles/prebuilt/2022_dmta_pathway.html
index 2e89fb9d..4a6f224e 100644
--- a/docs/dev/articles/prebuilt/2022_dmta_pathway.html
+++ b/docs/dev/articles/prebuilt/2022_dmta_pathway.html
@@ -34,14 +34,14 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../../index.html">mkin</a>
- <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.2.2</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.2.3</span>
</span>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li>
- <a href="../../reference/index.html">Functions and data</a>
+ <a href="../../reference/index.html">Reference</a>
</li>
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
@@ -53,6 +53,9 @@
<li>
<a href="../../articles/mkin.html">Introduction to mkin</a>
</li>
+ <li class="divider">
+ </li>
+<li class="dropdown-header">Example evaluations with (generalised) nonlinear least squares</li>
<li>
<a href="../../articles/FOCUS_D.html">Example evaluation of FOCUS Example Dataset D</a>
</li>
@@ -60,22 +63,31 @@
<a href="../../articles/FOCUS_L.html">Example evaluation of FOCUS Laboratory Data L1 to L3</a>
</li>
<li>
- <a href="../../articles/web_only/dimethenamid_2018.html">Example evaluations of dimethenamid data from 2018 with nonlinear mixed-effects models</a>
+ <a href="../../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
+ </li>
+ <li class="divider">
</li>
+<li class="dropdown-header">Example evaluations with hierarchical models (nonlinear mixed-effects models)</li>
<li>
- <a href="../../articles/web_only/multistart.html">Short demo of the multistart method</a>
+ <a href="../../articles/prebuilt/2022_dmta_parent.html">Testing hierarchical parent degradation kinetics with residue data on dimethenamid and dimethenamid-P</a>
</li>
<li>
- <a href="../../articles/web_only/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a>
+ <a href="../../articles/prebuilt/2022_dmta_pathway.html">Testing hierarchical pathway kinetics with residue data on dimethenamid and dimethenamid-P</a>
</li>
<li>
- <a href="../../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
+ <a href="../../articles/prebuilt/2022_cyan_pathway.html">Testing hierarchical pathway kinetics with residue data on cyantraniliprole</a>
</li>
<li>
- <a href="../../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
+ <a href="../../articles/web_only/dimethenamid_2018.html">Comparison of saemix and nlme evaluations of dimethenamid data from 2018</a>
</li>
<li>
- <a href="../../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ <a href="../../articles/web_only/multistart.html">Short demo of the multistart method</a>
+ </li>
+ <li class="divider">
+ </li>
+<li class="dropdown-header">Performance</li>
+ <li>
+ <a href="../../articles/web_only/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a>
</li>
<li>
<a href="../../articles/web_only/benchmarks.html">Benchmark timings for mkin</a>
@@ -83,6 +95,15 @@
<li>
<a href="../../articles/web_only/saem_benchmarks.html">Benchmark timings for saem.mmkin</a>
</li>
+ <li class="divider">
+ </li>
+<li class="dropdown-header">Miscellaneous</li>
+ <li>
+ <a href="../../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
+ </li>
+ <li>
+ <a href="../../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
@@ -115,7 +136,7 @@ residue data on dimethenamid and dimethenamid-P</h1>
Ranke</h4>
<h4 data-toc-skip class="date">Last change on 8 January
-2023, last compiled on 28 Januar 2023</h4>
+2023, last compiled on 17 Februar 2023</h4>
<small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/prebuilt/2022_dmta_pathway.rmd" class="external-link"><code>vignettes/prebuilt/2022_dmta_pathway.rmd</code></a></small>
<div class="hidden name"><code>2022_dmta_pathway.rmd</code></div>
@@ -135,7 +156,7 @@ can be fitted with the mkin package.</p>
173340 (Application of nonlinear hierarchical models to the kinetic
evaluation of chemical degradation data) of the German Environment
Agency carried out in 2022 and 2023.</p>
-<p>The mkin package is used in version 1.2.2, which is currently under
+<p>The mkin package is used in version 1.2.3, which is currently under
development. It contains the test data, and the functions used in the
evaluations. The <code>saemix</code> package is used as a backend for
fitting the NLHM, but is also loaded to make the convergence plot
diff --git a/docs/dev/articles/web_only/benchmarks.html b/docs/dev/articles/web_only/benchmarks.html
index b37ac926..a2d9f7e8 100644
--- a/docs/dev/articles/web_only/benchmarks.html
+++ b/docs/dev/articles/web_only/benchmarks.html
@@ -34,14 +34,14 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../../index.html">mkin</a>
- <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.2.2</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.2.3</span>
</span>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li>
- <a href="../../reference/index.html">Functions and data</a>
+ <a href="../../reference/index.html">Reference</a>
</li>
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
@@ -53,6 +53,9 @@
<li>
<a href="../../articles/mkin.html">Introduction to mkin</a>
</li>
+ <li class="divider">
+ </li>
+<li class="dropdown-header">Example evaluations with (generalised) nonlinear least squares</li>
<li>
<a href="../../articles/FOCUS_D.html">Example evaluation of FOCUS Example Dataset D</a>
</li>
@@ -60,22 +63,31 @@
<a href="../../articles/FOCUS_L.html">Example evaluation of FOCUS Laboratory Data L1 to L3</a>
</li>
<li>
- <a href="../../articles/web_only/dimethenamid_2018.html">Example evaluations of dimethenamid data from 2018 with nonlinear mixed-effects models</a>
+ <a href="../../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
</li>
+ <li class="divider">
+ </li>
+<li class="dropdown-header">Example evaluations with hierarchical models (nonlinear mixed-effects models)</li>
<li>
- <a href="../../articles/web_only/multistart.html">Short demo of the multistart method</a>
+ <a href="../../articles/prebuilt/2022_dmta_parent.html">Testing hierarchical parent degradation kinetics with residue data on dimethenamid and dimethenamid-P</a>
</li>
<li>
- <a href="../../articles/web_only/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a>
+ <a href="../../articles/prebuilt/2022_dmta_pathway.html">Testing hierarchical pathway kinetics with residue data on dimethenamid and dimethenamid-P</a>
</li>
<li>
- <a href="../../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
+ <a href="../../articles/prebuilt/2022_cyan_pathway.html">Testing hierarchical pathway kinetics with residue data on cyantraniliprole</a>
</li>
<li>
- <a href="../../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
+ <a href="../../articles/web_only/dimethenamid_2018.html">Comparison of saemix and nlme evaluations of dimethenamid data from 2018</a>
</li>
<li>
- <a href="../../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ <a href="../../articles/web_only/multistart.html">Short demo of the multistart method</a>
+ </li>
+ <li class="divider">
+ </li>
+<li class="dropdown-header">Performance</li>
+ <li>
+ <a href="../../articles/web_only/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a>
</li>
<li>
<a href="../../articles/web_only/benchmarks.html">Benchmark timings for mkin</a>
@@ -83,6 +95,15 @@
<li>
<a href="../../articles/web_only/saem_benchmarks.html">Benchmark timings for saem.mmkin</a>
</li>
+ <li class="divider">
+ </li>
+<li class="dropdown-header">Miscellaneous</li>
+ <li>
+ <a href="../../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
+ </li>
+ <li>
+ <a href="../../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
@@ -106,13 +127,15 @@
- </header><script src="benchmarks_files/accessible-code-block-0.0.1/empty-anchor.js"></script><div class="row">
+ </header><div class="row">
<div class="col-md-9 contents">
<div class="page-header toc-ignore">
<h1 data-toc-skip>Benchmark timings for mkin</h1>
- <h4 data-toc-skip class="author">Johannes Ranke</h4>
+ <h4 data-toc-skip class="author">Johannes
+Ranke</h4>
- <h4 data-toc-skip class="date">Last change 14 July 2022 (rebuilt 2022-11-24)</h4>
+ <h4 data-toc-skip class="date">Last change 17 February 2023
+(rebuilt 2023-02-17)</h4>
<small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/web_only/benchmarks.rmd" class="external-link"><code>vignettes/web_only/benchmarks.rmd</code></a></small>
<div class="hidden name"><code>benchmarks.rmd</code></div>
@@ -121,9 +144,15 @@
-<p>Each system is characterized by the operating system type, the CPU type, the mkin version, and, as in June 2022 the current R version lead to worse performance, the R version. A compiler was available, so if no analytical solution was available, compiled ODE models are used.</p>
-<p>Every fit is only performed once, so the accuracy of the benchmarks is limited.</p>
-<p>The following wrapper function for <code>mmkin</code> is used because the way the error model is specified was changed in mkin version 0.9.49.1.</p>
+<p>Each system is characterized by the operating system type, the CPU
+type, the mkin version, and, as in June 2022 the current R version lead
+to worse performance, the R version. A compiler was available, so if no
+analytical solution was available, compiled ODE models are used.</p>
+<p>Every fit is only performed once, so the accuracy of the benchmarks
+is limited.</p>
+<p>The following wrapper function for <code>mmkin</code> is used because
+the way the error model is specified was changed in mkin version
+0.9.49.1.</p>
<div class="sourceCode" id="cb1"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="kw">if</span> <span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/utils/packageDescription.html" class="external-link">packageVersion</a></span><span class="op">(</span><span class="st">"mkin"</span><span class="op">)</span> <span class="op">&gt;</span> <span class="st">"0.9.48.1"</span><span class="op">)</span> <span class="op">{</span></span>
<span> <span class="va">mmkin_bench</span> <span class="op">&lt;-</span> <span class="kw">function</span><span class="op">(</span><span class="va">models</span>, <span class="va">datasets</span>, <span class="va">error_model</span> <span class="op">=</span> <span class="st">"const"</span><span class="op">)</span> <span class="op">{</span></span>
@@ -195,11 +224,14 @@
<div class="section level2">
<h2 id="results">Results<a class="anchor" aria-label="anchor" href="#results"></a>
</h2>
-<p>Benchmarks for all available error models are shown. They are intended for improving mkin, not for comparing CPUs or operating systems. All trademarks belong to their respective owners.</p>
+<p>Benchmarks for all available error models are shown. They are
+intended for improving mkin, not for comparing CPUs or operating
+systems. All trademarks belong to their respective owners.</p>
<div class="section level3">
<h3 id="parent-only">Parent only<a class="anchor" aria-label="anchor" href="#parent-only"></a>
</h3>
-<p>Constant variance (t1) and two-component error model (t2) for four models fitted to two datasets, i.e. eight fits for each test.</p>
+<p>Constant variance (t1) and two-component error model (t2) for four
+models fitted to two datasets, i.e. eight fits for each test.</p>
<table class="table">
<thead><tr class="header">
<th align="left">OS</th>
@@ -362,13 +394,39 @@
<td align="right">2.187</td>
<td align="right">3.851</td>
</tr>
+<tr class="even">
+<td align="left">Linux</td>
+<td align="left">Ryzen 9 7950X</td>
+<td align="left">4.2.2</td>
+<td align="left">1.2.0</td>
+<td align="right">1.288</td>
+<td align="right">1.794</td>
+</tr>
+<tr class="odd">
+<td align="left">Linux</td>
+<td align="left">Ryzen 9 7950X</td>
+<td align="left">4.2.2</td>
+<td align="left">1.2.2</td>
+<td align="right">1.276</td>
+<td align="right">1.804</td>
+</tr>
+<tr class="even">
+<td align="left">Linux</td>
+<td align="left">Ryzen 9 7950X</td>
+<td align="left">4.2.2</td>
+<td align="left">1.2.3</td>
+<td align="right">1.370</td>
+<td align="right">1.883</td>
+</tr>
</tbody>
</table>
</div>
<div class="section level3">
<h3 id="one-metabolite">One metabolite<a class="anchor" aria-label="anchor" href="#one-metabolite"></a>
</h3>
-<p>Constant variance (t3), two-component error model (t4), and variance by variable (t5) for three models fitted to one dataset, i.e. three fits for each test.</p>
+<p>Constant variance (t3), two-component error model (t4), and variance
+by variable (t5) for three models fitted to one dataset, i.e. three fits
+for each test.</p>
<table class="table">
<thead><tr class="header">
<th align="left">OS</th>
@@ -551,14 +609,55 @@
<td align="right">6.335</td>
<td align="right">3.003</td>
</tr>
+<tr class="even">
+<td align="left">Linux</td>
+<td align="left">Ryzen 9 7950X</td>
+<td align="left">4.2.2</td>
+<td align="left">1.2.0</td>
+<td align="right">0.792</td>
+<td align="right">2.378</td>
+<td align="right">1.245</td>
+</tr>
+<tr class="odd">
+<td align="left">Linux</td>
+<td align="left">Ryzen 9 7950X</td>
+<td align="left">4.2.2</td>
+<td align="left">1.2.2</td>
+<td align="right">0.784</td>
+<td align="right">2.355</td>
+<td align="right">1.233</td>
+</tr>
+<tr class="even">
+<td align="left">Linux</td>
+<td align="left">Ryzen 9 7950X</td>
+<td align="left">4.2.2</td>
+<td align="left">1.2.3</td>
+<td align="right">0.770</td>
+<td align="right">2.011</td>
+<td align="right">1.123</td>
+</tr>
</tbody>
</table>
</div>
<div class="section level3">
<h3 id="two-metabolites">Two metabolites<a class="anchor" aria-label="anchor" href="#two-metabolites"></a>
</h3>
-<p>Constant variance (t6 and t7), two-component error model (t8 and t9), and variance by variable (t10 and t11) for one model fitted to one dataset, i.e. one fit for each test.</p>
+<p>Constant variance (t6 and t7), two-component error model (t8 and t9),
+and variance by variable (t10 and t11) for one model fitted to one
+dataset, i.e. one fit for each test.</p>
<table class="table">
+<colgroup>
+<col width="8%">
+<col width="19%">
+<col width="8%">
+<col width="12%">
+<col width="8%">
+<col width="8%">
+<col width="8%">
+<col width="9%">
+<col width="8%">
+<col width="9%">
+</colgroup>
<thead><tr class="header">
<th align="left">OS</th>
<th align="left">CPU</th>
@@ -800,6 +899,42 @@
<td align="right">1.976</td>
<td align="right">3.013</td>
</tr>
+<tr class="even">
+<td align="left">Linux</td>
+<td align="left">Ryzen 9 7950X</td>
+<td align="left">4.2.2</td>
+<td align="left">1.2.0</td>
+<td align="right">0.445</td>
+<td align="right">0.591</td>
+<td align="right">0.660</td>
+<td align="right">1.190</td>
+<td align="right">0.814</td>
+<td align="right">1.100</td>
+</tr>
+<tr class="odd">
+<td align="left">Linux</td>
+<td align="left">Ryzen 9 7950X</td>
+<td align="left">4.2.2</td>
+<td align="left">1.2.2</td>
+<td align="right">0.443</td>
+<td align="right">0.586</td>
+<td align="right">0.661</td>
+<td align="right">1.176</td>
+<td align="right">0.803</td>
+<td align="right">1.097</td>
+</tr>
+<tr class="even">
+<td align="left">Linux</td>
+<td align="left">Ryzen 9 7950X</td>
+<td align="left">4.2.2</td>
+<td align="left">1.2.3</td>
+<td align="right">0.418</td>
+<td align="right">0.530</td>
+<td align="right">0.591</td>
+<td align="right">1.006</td>
+<td align="right">0.716</td>
+<td align="right">0.949</td>
+</tr>
</tbody>
</table>
</div>
@@ -823,7 +958,7 @@
<div class="pkgdown">
<p></p>
-<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.6.</p>
+<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
</div>
</footer>
diff --git a/docs/dev/articles/web_only/saem_benchmarks.html b/docs/dev/articles/web_only/saem_benchmarks.html
index 4fe648c6..551b34d4 100644
--- a/docs/dev/articles/web_only/saem_benchmarks.html
+++ b/docs/dev/articles/web_only/saem_benchmarks.html
@@ -34,7 +34,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../../index.html">mkin</a>
- <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.2.2</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.2.3</span>
</span>
</div>
@@ -134,8 +134,8 @@
<h4 data-toc-skip class="author">Johannes
Ranke</h4>
- <h4 data-toc-skip class="date">Last change 14 November 2022
-(rebuilt 2023-01-28)</h4>
+ <h4 data-toc-skip class="date">Last change 17 February 2023
+(rebuilt 2023-02-17)</h4>
<small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/web_only/saem_benchmarks.rmd" class="external-link"><code>vignettes/web_only/saem_benchmarks.rmd</code></a></small>
<div class="hidden name"><code>saem_benchmarks.rmd</code></div>
@@ -191,7 +191,7 @@ explanation of the following preprocessing.</p>
<div class="sourceCode" id="cb4"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/stats/anova.html" class="external-link">anova</a></span><span class="op">(</span></span>
<span> <span class="va">sfo_const</span>, <span class="va">dfop_const</span>, <span class="va">sforb_const</span>, <span class="va">hs_const</span>,</span>
-<span> <span class="va">sfo_tc</span>, <span class="va">dfop_tc</span>, <span class="va">sforb_tc</span>, <span class="va">hs_tc</span><span class="op">)</span> <span class="op">|&gt;</span> <span class="fu">kable</span><span class="op">(</span>, digits <span class="op">=</span> <span class="fl">1</span><span class="op">)</span></span></code></pre></div>
+<span> <span class="va">sfo_tc</span>, <span class="va">dfop_tc</span>, <span class="va">sforb_tc</span>, <span class="va">hs_tc</span><span class="op">)</span> <span class="op">|&gt;</span> <span class="fu"><a href="https://rdrr.io/pkg/knitr/man/kable.html" class="external-link">kable</a></span><span class="op">(</span>, digits <span class="op">=</span> <span class="fl">1</span><span class="op">)</span></span></code></pre></div>
<table class="table">
<thead><tr class="header">
<th align="left"></th>
@@ -331,17 +331,7 @@ systems. All trademarks belong to their respective owners.</p>
<h3 id="parent-only-1">Parent only<a class="anchor" aria-label="anchor" href="#parent-only-1"></a>
</h3>
<p>Constant variance for SFO, DFOP, SFORB and HS.</p>
-<table style="width:100%;" class="table">
-<colgroup>
-<col width="42%">
-<col width="8%">
-<col width="8%">
-<col width="9%">
-<col width="8%">
-<col width="8%">
-<col width="8%">
-<col width="8%">
-</colgroup>
+<table class="table">
<thead><tr class="header">
<th align="left">CPU</th>
<th align="left">OS</th>
@@ -374,29 +364,39 @@ systems. All trademarks belong to their respective owners.</p>
<td align="right">4.851</td>
</tr>
<tr class="odd">
-<td align="left">Ryzen 9 7950X 16-Core Processor</td>
+<td align="left">Ryzen 9 7950X</td>
+<td align="left">Linux</td>
+<td align="left">1.2.1</td>
+<td align="left">3.2</td>
+<td align="right">1.352</td>
+<td align="right">2.813</td>
+<td align="right">2.401</td>
+<td align="right">2.074</td>
+</tr>
+<tr class="even">
+<td align="left">Ryzen 9 7950X</td>
<td align="left">Linux</td>
<td align="left">1.2.2</td>
<td align="left">3.2</td>
-<td align="right">1.470</td>
-<td align="right">2.263</td>
-<td align="right">1.840</td>
-<td align="right">2.299</td>
+<td align="right">1.328</td>
+<td align="right">2.738</td>
+<td align="right">2.336</td>
+<td align="right">2.023</td>
+</tr>
+<tr class="odd">
+<td align="left">Ryzen 9 7950X</td>
+<td align="left">Linux</td>
+<td align="left">1.2.3</td>
+<td align="left">3.2</td>
+<td align="right">1.118</td>
+<td align="right">2.036</td>
+<td align="right">2.010</td>
+<td align="right">2.088</td>
</tr>
</tbody>
</table>
<p>Two-component error fits for SFO, DFOP, SFORB and HS.</p>
-<table style="width:100%;" class="table">
-<colgroup>
-<col width="42%">
-<col width="8%">
-<col width="8%">
-<col width="9%">
-<col width="8%">
-<col width="8%">
-<col width="8%">
-<col width="8%">
-</colgroup>
+<table class="table">
<thead><tr class="header">
<th align="left">CPU</th>
<th align="left">OS</th>
@@ -429,14 +429,34 @@ systems. All trademarks belong to their respective owners.</p>
<td align="right">8.401</td>
</tr>
<tr class="odd">
-<td align="left">Ryzen 9 7950X 16-Core Processor</td>
+<td align="left">Ryzen 9 7950X</td>
+<td align="left">Linux</td>
+<td align="left">1.2.1</td>
+<td align="left">3.2</td>
+<td align="right">2.388</td>
+<td align="right">3.033</td>
+<td align="right">3.532</td>
+<td align="right">3.310</td>
+</tr>
+<tr class="even">
+<td align="left">Ryzen 9 7950X</td>
<td align="left">Linux</td>
<td align="left">1.2.2</td>
<td align="left">3.2</td>
-<td align="right">2.118</td>
-<td align="right">3.528</td>
-<td align="right">3.295</td>
-<td align="right">3.157</td>
+<td align="right">2.341</td>
+<td align="right">2.968</td>
+<td align="right">3.465</td>
+<td align="right">3.341</td>
+</tr>
+<tr class="odd">
+<td align="left">Ryzen 9 7950X</td>
+<td align="left">Linux</td>
+<td align="left">1.2.3</td>
+<td align="left">3.2</td>
+<td align="right">2.159</td>
+<td align="right">3.584</td>
+<td align="right">3.307</td>
+<td align="right">3.460</td>
</tr>
</tbody>
</table>
@@ -446,14 +466,6 @@ systems. All trademarks belong to their respective owners.</p>
</h3>
<p>Two-component error for DFOP-SFO and SFORB-SFO.</p>
<table class="table">
-<colgroup>
-<col width="48%">
-<col width="9%">
-<col width="9%">
-<col width="10%">
-<col width="10%">
-<col width="12%">
-</colgroup>
<thead><tr class="header">
<th align="left">CPU</th>
<th align="left">OS</th>
@@ -480,12 +492,28 @@ systems. All trademarks belong to their respective owners.</p>
<td align="right">798.580</td>
</tr>
<tr class="odd">
-<td align="left">Ryzen 9 7950X 16-Core Processor</td>
+<td align="left">Ryzen 9 7950X</td>
+<td align="left">Linux</td>
+<td align="left">1.2.1</td>
+<td align="left">3.2</td>
+<td align="right">11.247</td>
+<td align="right">285.216</td>
+</tr>
+<tr class="even">
+<td align="left">Ryzen 9 7950X</td>
<td align="left">Linux</td>
<td align="left">1.2.2</td>
<td align="left">3.2</td>
-<td align="right">12.336</td>
-<td align="right">277.666</td>
+<td align="right">11.242</td>
+<td align="right">284.258</td>
+</tr>
+<tr class="odd">
+<td align="left">Ryzen 9 7950X</td>
+<td align="left">Linux</td>
+<td align="left">1.2.3</td>
+<td align="left">3.2</td>
+<td align="right">11.796</td>
+<td align="right">216.012</td>
</tr>
</tbody>
</table>
@@ -518,11 +546,25 @@ systems. All trademarks belong to their respective owners.</p>
<td align="right">1312.445</td>
</tr>
<tr class="odd">
-<td align="left">Ryzen 9 7950X 16-Core Processor</td>
+<td align="left">Ryzen 9 7950X</td>
+<td align="left">Linux</td>
+<td align="left">1.2.1</td>
+<td align="left">3.2</td>
+<td align="right">489.939</td>
+</tr>
+<tr class="even">
+<td align="left">Ryzen 9 7950X</td>
<td align="left">Linux</td>
<td align="left">1.2.2</td>
<td align="left">3.2</td>
-<td align="right">459.051</td>
+<td align="right">482.970</td>
+</tr>
+<tr class="odd">
+<td align="left">Ryzen 9 7950X</td>
+<td align="left">Linux</td>
+<td align="left">1.2.3</td>
+<td align="left">3.2</td>
+<td align="right">392.364</td>
</tr>
</tbody>
</table>

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