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-rw-r--r--docs/dev/articles/FOCUS_D.html8
-rw-r--r--docs/dev/articles/FOCUS_L.html40
-rw-r--r--docs/dev/articles/index.html2
-rw-r--r--docs/dev/articles/mkin.html2
-rw-r--r--docs/dev/articles/twa.html2
-rw-r--r--docs/dev/articles/web_only/FOCUS_Z.html2
-rw-r--r--docs/dev/articles/web_only/NAFTA_examples.html2
-rw-r--r--docs/dev/articles/web_only/benchmarks.html20
-rw-r--r--docs/dev/articles/web_only/compiled_models.html14
9 files changed, 46 insertions, 46 deletions
diff --git a/docs/dev/articles/FOCUS_D.html b/docs/dev/articles/FOCUS_D.html
index 0b3ae03a..7d5dd732 100644
--- a/docs/dev/articles/FOCUS_D.html
+++ b/docs/dev/articles/FOCUS_D.html
@@ -32,7 +32,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-danger" data-toggle="tooltip" data-placement="bottom" title="In-development version">0.9.50.3</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">0.9.50.3</span>
</span>
</div>
@@ -181,8 +181,8 @@
<div class="sourceCode" id="cb11"><html><body><pre class="r"><span class="fu"><a href="https://rdrr.io/r/base/summary.html">summary</a></span>(<span class="no">fit</span>)</pre></body></html></div>
<pre><code>## mkin version used for fitting: 0.9.50.3
## R version used for fitting: 4.0.0
-## Date of fit: Wed May 27 06:02:21 2020
-## Date of summary: Wed May 27 06:02:21 2020
+## Date of fit: Wed May 27 07:51:36 2020
+## Date of summary: Wed May 27 07:51:37 2020
##
## Equations:
## d_parent/dt = - k_parent * parent
@@ -190,7 +190,7 @@
##
## Model predictions using solution type analytical
##
-## Fitted using 421 model solutions performed in 0.177 s
+## Fitted using 421 model solutions performed in 0.173 s
##
## Error model: Constant variance
##
diff --git a/docs/dev/articles/FOCUS_L.html b/docs/dev/articles/FOCUS_L.html
index 91043d0f..d69815ab 100644
--- a/docs/dev/articles/FOCUS_L.html
+++ b/docs/dev/articles/FOCUS_L.html
@@ -32,7 +32,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-danger" data-toggle="tooltip" data-placement="bottom" title="In-development version">0.9.50.3</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">0.9.50.3</span>
</span>
</div>
@@ -127,15 +127,15 @@
<span class="fu"><a href="https://rdrr.io/r/base/summary.html">summary</a></span>(<span class="no">m.L1.SFO</span>)</pre></body></html></div>
<pre><code>## mkin version used for fitting: 0.9.50.3
## R version used for fitting: 4.0.0
-## Date of fit: Wed May 27 06:02:23 2020
-## Date of summary: Wed May 27 06:02:23 2020
+## Date of fit: Wed May 27 07:51:39 2020
+## Date of summary: Wed May 27 07:51:39 2020
##
## Equations:
## d_parent/dt = - k_parent_sink * parent
##
## Model predictions using solution type analytical
##
-## Fitted using 133 model solutions performed in 0.03 s
+## Fitted using 133 model solutions performed in 0.031 s
##
## Error model: Constant variance
##
@@ -228,8 +228,8 @@
## doubtful</code></pre>
<pre><code>## mkin version used for fitting: 0.9.50.3
## R version used for fitting: 4.0.0
-## Date of fit: Wed May 27 06:02:24 2020
-## Date of summary: Wed May 27 06:02:24 2020
+## Date of fit: Wed May 27 07:51:39 2020
+## Date of summary: Wed May 27 07:51:39 2020
##
##
## Warning: Optimisation did not converge:
@@ -336,15 +336,15 @@
<div class="sourceCode" id="cb17"><html><body><pre class="r"><span class="fu"><a href="https://rdrr.io/r/base/summary.html">summary</a></span>(<span class="no">m.L2.FOMC</span>, <span class="kw">data</span> <span class="kw">=</span> <span class="fl">FALSE</span>)</pre></body></html></div>
<pre><code>## mkin version used for fitting: 0.9.50.3
## R version used for fitting: 4.0.0
-## Date of fit: Wed May 27 06:02:24 2020
-## Date of summary: Wed May 27 06:02:24 2020
+## Date of fit: Wed May 27 07:51:40 2020
+## Date of summary: Wed May 27 07:51:40 2020
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted using 239 model solutions performed in 0.047 s
+## Fitted using 239 model solutions performed in 0.048 s
##
## Error model: Constant variance
##
@@ -415,8 +415,8 @@
<div class="sourceCode" id="cb20"><html><body><pre class="r"><span class="fu"><a href="https://rdrr.io/r/base/summary.html">summary</a></span>(<span class="no">m.L2.DFOP</span>, <span class="kw">data</span> <span class="kw">=</span> <span class="fl">FALSE</span>)</pre></body></html></div>
<pre><code>## mkin version used for fitting: 0.9.50.3
## R version used for fitting: 4.0.0
-## Date of fit: Wed May 27 06:02:24 2020
-## Date of summary: Wed May 27 06:02:24 2020
+## Date of fit: Wed May 27 07:51:40 2020
+## Date of summary: Wed May 27 07:51:40 2020
##
## Equations:
## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -518,8 +518,8 @@
<div class="sourceCode" id="cb24"><html><body><pre class="r"><span class="fu"><a href="https://rdrr.io/r/base/summary.html">summary</a></span>(<span class="no">mm.L3</span><span class="kw">[[</span><span class="st">"DFOP"</span>, <span class="fl">1</span>]])</pre></body></html></div>
<pre><code>## mkin version used for fitting: 0.9.50.3
## R version used for fitting: 4.0.0
-## Date of fit: Wed May 27 06:02:25 2020
-## Date of summary: Wed May 27 06:02:25 2020
+## Date of fit: Wed May 27 07:51:41 2020
+## Date of summary: Wed May 27 07:51:41 2020
##
## Equations:
## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -528,7 +528,7 @@
##
## Model predictions using solution type analytical
##
-## Fitted using 373 model solutions performed in 0.08 s
+## Fitted using 373 model solutions performed in 0.079 s
##
## Error model: Constant variance
##
@@ -627,15 +627,15 @@
<div class="sourceCode" id="cb29"><html><body><pre class="r"><span class="fu"><a href="https://rdrr.io/r/base/summary.html">summary</a></span>(<span class="no">mm.L4</span><span class="kw">[[</span><span class="st">"SFO"</span>, <span class="fl">1</span>]], <span class="kw">data</span> <span class="kw">=</span> <span class="fl">FALSE</span>)</pre></body></html></div>
<pre><code>## mkin version used for fitting: 0.9.50.3
## R version used for fitting: 4.0.0
-## Date of fit: Wed May 27 06:02:25 2020
-## Date of summary: Wed May 27 06:02:26 2020
+## Date of fit: Wed May 27 07:51:41 2020
+## Date of summary: Wed May 27 07:51:41 2020
##
## Equations:
## d_parent/dt = - k_parent_sink * parent
##
## Model predictions using solution type analytical
##
-## Fitted using 142 model solutions performed in 0.029 s
+## Fitted using 142 model solutions performed in 0.028 s
##
## Error model: Constant variance
##
@@ -691,15 +691,15 @@
<div class="sourceCode" id="cb31"><html><body><pre class="r"><span class="fu"><a href="https://rdrr.io/r/base/summary.html">summary</a></span>(<span class="no">mm.L4</span><span class="kw">[[</span><span class="st">"FOMC"</span>, <span class="fl">1</span>]], <span class="kw">data</span> <span class="kw">=</span> <span class="fl">FALSE</span>)</pre></body></html></div>
<pre><code>## mkin version used for fitting: 0.9.50.3
## R version used for fitting: 4.0.0
-## Date of fit: Wed May 27 06:02:25 2020
-## Date of summary: Wed May 27 06:02:26 2020
+## Date of fit: Wed May 27 07:51:41 2020
+## Date of summary: Wed May 27 07:51:41 2020
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted using 224 model solutions performed in 0.043 s
+## Fitted using 224 model solutions performed in 0.044 s
##
## Error model: Constant variance
##
diff --git a/docs/dev/articles/index.html b/docs/dev/articles/index.html
index 3d5dd360..472e9396 100644
--- a/docs/dev/articles/index.html
+++ b/docs/dev/articles/index.html
@@ -71,7 +71,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-danger" data-toggle="tooltip" data-placement="bottom" title="In-development version">0.9.50.3</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">0.9.50.3</span>
</span>
</div>
diff --git a/docs/dev/articles/mkin.html b/docs/dev/articles/mkin.html
index 2dd6dcb8..4cc06a43 100644
--- a/docs/dev/articles/mkin.html
+++ b/docs/dev/articles/mkin.html
@@ -32,7 +32,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-danger" data-toggle="tooltip" data-placement="bottom" title="In-development version">0.9.50.3</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">0.9.50.3</span>
</span>
</div>
diff --git a/docs/dev/articles/twa.html b/docs/dev/articles/twa.html
index d4754a1f..29be6c95 100644
--- a/docs/dev/articles/twa.html
+++ b/docs/dev/articles/twa.html
@@ -32,7 +32,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-danger" data-toggle="tooltip" data-placement="bottom" title="In-development version">0.9.50.3</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">0.9.50.3</span>
</span>
</div>
diff --git a/docs/dev/articles/web_only/FOCUS_Z.html b/docs/dev/articles/web_only/FOCUS_Z.html
index 7fca4e49..270232d7 100644
--- a/docs/dev/articles/web_only/FOCUS_Z.html
+++ b/docs/dev/articles/web_only/FOCUS_Z.html
@@ -32,7 +32,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../../index.html">mkin</a>
- <span class="version label label-danger" data-toggle="tooltip" data-placement="bottom" title="In-development version">0.9.50.3</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">0.9.50.3</span>
</span>
</div>
diff --git a/docs/dev/articles/web_only/NAFTA_examples.html b/docs/dev/articles/web_only/NAFTA_examples.html
index 29f4cd8b..12499452 100644
--- a/docs/dev/articles/web_only/NAFTA_examples.html
+++ b/docs/dev/articles/web_only/NAFTA_examples.html
@@ -32,7 +32,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../../index.html">mkin</a>
- <span class="version label label-danger" data-toggle="tooltip" data-placement="bottom" title="In-development version">0.9.50.3</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">0.9.50.3</span>
</span>
</div>
diff --git a/docs/dev/articles/web_only/benchmarks.html b/docs/dev/articles/web_only/benchmarks.html
index b46b873c..9e53f113 100644
--- a/docs/dev/articles/web_only/benchmarks.html
+++ b/docs/dev/articles/web_only/benchmarks.html
@@ -32,7 +32,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../../index.html">mkin</a>
- <span class="version label label-danger" data-toggle="tooltip" data-placement="bottom" title="In-development version">0.9.50.3</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">0.9.50.3</span>
</span>
</div>
@@ -216,8 +216,8 @@
</tr>
<tr class="odd">
<td align="left">0.9.50.3</td>
-<td align="right">1.752</td>
-<td align="right">3.728</td>
+<td align="right">1.746</td>
+<td align="right">3.716</td>
</tr>
</tbody>
</table>
@@ -272,9 +272,9 @@
</tr>
<tr class="odd">
<td align="left">0.9.50.3</td>
-<td align="right">1.389</td>
-<td align="right">6.579</td>
-<td align="right">2.740</td>
+<td align="right">1.385</td>
+<td align="right">6.562</td>
+<td align="right">2.736</td>
</tr>
</tbody>
</table>
@@ -351,11 +351,11 @@
<tr class="odd">
<td align="left">0.9.50.3</td>
<td align="right">0.760</td>
-<td align="right">1.252</td>
-<td align="right">1.457</td>
-<td align="right">4.201</td>
+<td align="right">1.226</td>
+<td align="right">1.455</td>
+<td align="right">4.198</td>
<td align="right">2.007</td>
-<td align="right">2.979</td>
+<td align="right">2.976</td>
</tr>
</tbody>
</table>
diff --git a/docs/dev/articles/web_only/compiled_models.html b/docs/dev/articles/web_only/compiled_models.html
index 7b5dc8ca..997e90ea 100644
--- a/docs/dev/articles/web_only/compiled_models.html
+++ b/docs/dev/articles/web_only/compiled_models.html
@@ -32,7 +32,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../../index.html">mkin</a>
- <span class="version label label-danger" data-toggle="tooltip" data-placement="bottom" title="In-development version">0.9.50.3</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">0.9.50.3</span>
</span>
</div>
@@ -153,10 +153,10 @@
<span class="fu"><a href="https://rdrr.io/r/base/print.html">print</a></span>(<span class="st">"R package rbenchmark is not available"</span>)
}</pre></body></html></div>
<pre><code>## test replications relative elapsed
-## 4 analytical 1 1.000 0.202
-## 3 deSolve, compiled 1 1.703 0.344
-## 2 Eigenvalue based 1 1.990 0.402
-## 1 deSolve, not compiled 1 40.173 8.115</code></pre>
+## 4 analytical 1 1.000 0.201
+## 3 deSolve, compiled 1 1.711 0.344
+## 2 Eigenvalue based 1 1.960 0.394
+## 1 deSolve, not compiled 1 39.881 8.016</code></pre>
<p>We see that using the compiled model is by more than a factor of 10 faster than using deSolve without compiled code.</p>
</div>
<div id="model-without-analytical-solution" class="section level2">
@@ -182,8 +182,8 @@
}</pre></body></html></div>
<pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre>
<pre><code>## test replications relative elapsed
-## 2 deSolve, compiled 1 1.000 0.469
-## 1 deSolve, not compiled 1 30.384 14.250</code></pre>
+## 2 deSolve, compiled 1 1.000 0.467
+## 1 deSolve, not compiled 1 30.244 14.124</code></pre>
<p>Here we get a performance benefit of a factor of 30 using the version of the differential equation model compiled from C code!</p>
<p>This vignette was built with mkin 0.9.50.3 on</p>
<pre><code>## R version 4.0.0 (2020-04-24)

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