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href='http://github.com/jranke/mkin/blob/master/R/CAKE_export.R'><code>R/CAKE_export.R</code></a></small> + <div class="hidden name"><code>CAKE_export.Rd</code></div> + </div> + + <div class="ref-description"> + <p>In addition to the datasets, the pathways in the degradation model can be +specified as well.</p> + </div> + + <pre class="usage"><span class='fu'>CAKE_export</span>( + <span class='no'>ds</span>, + <span class='kw'>map</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='st'>"Parent"</span>), + <span class='kw'>links</span> <span class='kw'>=</span> <span class='fl'>NA</span>, + <span class='kw'>filename</span> <span class='kw'>=</span> <span class='st'>"CAKE_export.csf"</span>, + <span class='kw'>path</span> <span class='kw'>=</span> <span class='st'>"."</span>, + <span class='kw'>overwrite</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, + <span class='kw'>study</span> <span class='kw'>=</span> <span class='st'>"Codlemone aerobic soil degradation"</span>, + <span class='kw'>description</span> <span class='kw'>=</span> <span class='st'>""</span>, + <span class='kw'>time_unit</span> <span class='kw'>=</span> <span class='st'>"days"</span>, + <span class='kw'>res_unit</span> <span class='kw'>=</span> <span class='st'>"% AR"</span>, + <span class='kw'>comment</span> <span class='kw'>=</span> <span class='st'>"Created using mkin::CAKE_export"</span>, + <span class='kw'>date</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/Sys.time.html'>Sys.Date</a></span>(), + <span class='kw'>optimiser</span> <span class='kw'>=</span> <span class='st'>"IRLS"</span> +)</pre> + + <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2> + <table class="ref-arguments"> + <colgroup><col class="name" /><col class="desc" /></colgroup> + <tr> + <th>ds</th> + <td><p>A named list of datasets in long format as compatible with +<code><a href='mkinfit.html'>mkinfit</a></code>.</p></td> + </tr> + <tr> + <th>map</th> + <td><p>A character vector with CAKE compartment names (Parent, A1, ...), +named with the names used in the list of datasets.</p></td> + </tr> + <tr> + <th>links</th> + <td><p>An optional character vector of target compartments, named with +the names of the source compartments. In order to make this easier, the +names are used as in the datasets supplied.</p></td> + </tr> + <tr> + <th>filename</th> + <td><p>Where to write the result. Should end in .csf in order to be +compatible with CAKE.</p></td> + </tr> + <tr> + <th>path</th> + <td><p>An optional path to the output file.</p></td> + </tr> + <tr> + <th>overwrite</th> + <td><p>If TRUE, existing files are overwritten.</p></td> + </tr> + <tr> + <th>study</th> + <td><p>The name of the study.</p></td> + </tr> + <tr> + <th>description</th> + <td><p>An optional description.</p></td> + </tr> + <tr> + <th>time_unit</th> + <td><p>The time unit for the residue data.</p></td> + </tr> + <tr> + <th>res_unit</th> + <td><p>The unit used for the residues.</p></td> + </tr> + <tr> + <th>comment</th> + <td><p>An optional comment.</p></td> + </tr> + <tr> + <th>date</th> + <td><p>The date of file creation.</p></td> + </tr> + <tr> + <th>optimiser</th> + <td><p>Can be OLS or IRLS.</p></td> + </tr> + </table> + + <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2> + + <p>The function is called for its side effect.</p> + + </div> + <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar"> + <nav id="toc" data-toggle="toc" class="sticky-top"> + <h2 data-toc-skip>Contents</h2> + </nav> + </div> +</div> + + + <footer> + <div class="copyright"> + <p>Developed by Johannes Ranke.</p> +</div> + +<div class="pkgdown"> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.5.1.</p> +</div> + + </footer> + </div> + + + + + </body> +</html> + + |