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diff --git a/docs/dev/reference/mkindsg.html b/docs/dev/reference/mkindsg.html
index 67c6e5df..d19a7a1d 100644
--- a/docs/dev/reference/mkindsg.html
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@@ -1,70 +1,15 @@
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+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1.0"><title>A class for dataset groups for mkin — mkindsg • mkin</title><!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script><!-- Bootstrap --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/css/bootstrap.min.css" integrity="sha256-bZLfwXAP04zRMK2BjiO8iu9pf4FbLqX6zitd+tIvLhE=" crossorigin="anonymous"><script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script><!-- bootstrap-toc --><link rel="stylesheet" href="../bootstrap-toc.css"><script src="../bootstrap-toc.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet"><script src="../pkgdown.js"></script><meta property="og:title" content="A class for dataset groups for mkin — mkindsg"><meta property="og:description" content="A container for working with datasets that share at least one compound,
so that combined evaluations are desirable.
Time normalisation factors are initialised with a value of 1 for each
-dataset if no data are supplied." />
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+<![endif]--></head><body data-spy="scroll" data-target="#toc">
+
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+ <header><div class="navbar navbar-default navbar-fixed-top" role="navigation">
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<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false">
@@ -75,23 +20,21 @@ dataset if no data are supplied." />
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<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.3.9000</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.1.2</span>
</span>
</div>
<div id="navbar" class="navbar-collapse collapse">
- <ul class="nav navbar-nav">
- <li>
+ <ul class="nav navbar-nav"><li>
<a href="../reference/index.html">Functions and data</a>
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- <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
+ <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
Articles
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+ <ul class="dropdown-menu" role="menu"><li>
<a href="../articles/mkin.html">Introduction to mkin</a>
</li>
<li>
@@ -101,6 +44,9 @@ dataset if no data are supplied." />
<a href="../articles/FOCUS_L.html">Example evaluation of FOCUS Laboratory Data L1 to L3</a>
</li>
<li>
+ <a href="../articles/web_only/dimethenamid_2018.html">Example evaluations of dimethenamid data from 2018 with nonlinear mixed-effects models</a>
+ </li>
+ <li>
<a href="../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
</li>
<li>
@@ -115,34 +61,27 @@ dataset if no data are supplied." />
<li>
<a href="../articles/web_only/benchmarks.html">Some benchmark timings</a>
</li>
- </ul>
-</li>
+ </ul></li>
<li>
<a href="../news/index.html">News</a>
</li>
- </ul>
- <ul class="nav navbar-nav navbar-right">
- <li>
- <a href="https://github.com/jranke/mkin/">
+ </ul><ul class="nav navbar-nav navbar-right"><li>
+ <a href="https://github.com/jranke/mkin/" class="external-link">
<span class="fab fa-github fa-lg"></span>
</a>
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+ </header><div class="row">
<div class="col-md-9 contents">
<div class="page-header">
<h1>A class for dataset groups for mkin</h1>
- <small class="dont-index">Source: <a href='https://github.com/jranke/mkin/blob/master/R/mkinds.R'><code>R/mkinds.R</code></a></small>
+ <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/R/mkinds.R" class="external-link"><code>R/mkinds.R</code></a></small>
<div class="hidden name"><code>mkindsg.Rd</code></div>
</div>
@@ -153,308 +92,336 @@ so that combined evaluations are desirable.</p>
dataset if no data are supplied.</p>
</div>
- <pre class="usage"><span class='co'># S3 method for mkindsg</span>
-<span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span><span class='op'>(</span><span class='va'>x</span>, data <span class='op'>=</span> <span class='cn'>FALSE</span>, verbose <span class='op'>=</span> <span class='va'>data</span>, <span class='va'>...</span><span class='op'>)</span></pre>
-
- <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
- <table class="ref-arguments">
- <colgroup><col class="name" /><col class="desc" /></colgroup>
- <tr>
- <th>x</th>
- <td><p>An mkindsg object.</p></td>
- </tr>
- <tr>
- <th>data</th>
- <td><p>Should the mkinds objects be printed with their data?</p></td>
- </tr>
- <tr>
- <th>verbose</th>
- <td><p>Should the mkinds objects be printed?</p></td>
- </tr>
- <tr>
- <th>...</th>
- <td><p>Not used.</p></td>
- </tr>
- </table>
-
- <h2 class="hasAnchor" id="public-fields"><a class="anchor" href="#public-fields"></a>Public fields</h2>
-
- <p><div class="r6-fields"></p><dl>
-<dt><code>title</code></dt><dd><p>A title for the dataset group</p></dd>
-
-<dt><code>ds</code></dt><dd><p>A list of mkinds objects</p></dd>
-
-<dt><code>observed_n</code></dt><dd><p>Occurrence counts of compounds in datasets</p></dd>
-
-<dt><code>f_time_norm</code></dt><dd><p>Time normalisation factors</p></dd>
-
-<dt><code>meta</code></dt><dd><p>A data frame with a row for each dataset,
+ <div id="ref-usage">
+ <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for mkindsg</span></span>
+<span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">x</span>, data <span class="op">=</span> <span class="cn">FALSE</span>, verbose <span class="op">=</span> <span class="va">data</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
+ </div>
+
+ <div id="arguments">
+ <h2>Arguments</h2>
+ <dl><dt>x</dt>
+<dd><p>An mkindsg object.</p></dd>
+
+
+<dt>data</dt>
+<dd><p>Should the mkinds objects be printed with their data?</p></dd>
+
+
+<dt>verbose</dt>
+<dd><p>Should the mkinds objects be printed?</p></dd>
+
+
+<dt>...</dt>
+<dd><p>Not used.</p></dd>
+
+</dl></div>
+ <div id="public-fields">
+ <h2>Public fields</h2>
+ <p></p><div class="r6-fields"><dl><dt><code>title</code></dt>
+<dd><p>A title for the dataset group</p></dd>
+
+
+<dt><code>ds</code></dt>
+<dd><p>A list of mkinds objects</p></dd>
+
+
+<dt><code>observed_n</code></dt>
+<dd><p>Occurrence counts of compounds in datasets</p></dd>
+
+
+<dt><code>f_time_norm</code></dt>
+<dd><p>Time normalisation factors</p></dd>
+
+
+<dt><code>meta</code></dt>
+<dd><p>A data frame with a row for each dataset,
containing additional information in the form
of categorical data (factors) or numerical data
(e.g. temperature, moisture,
or covariates like soil pH).</p></dd>
-</dl><p></div></p>
- <h2 class="hasAnchor" id="methods"><a class="anchor" href="#methods"></a>Methods</h2>
+</dl><p></p></div>
+ </div>
+ <div id="methods">
+ <h2>Methods</h2>
-<h3 class='hasAnchor' id='arguments'><a class='anchor' href='#arguments'></a>Public methods</h3>
-
-<ul>
-<li><p><a href='#method-new'><code>mkindsg$new()</code></a></p></li>
-<li><p><a href='#method-clone'><code>mkindsg$clone()</code></a></p></li>
-</ul>
-<p><hr>
-<a id="method-new"></a></p><h3 class='hasAnchor' id='arguments'><a class='anchor' href='#arguments'></a>Method <code>new()</code></h3>
-<p>Create a new mkindsg object</p><h4 class='hasAnchor' id='arguments'><a class='anchor' href='#arguments'></a>Usage</h4>
-<p><div class="r"></p><pre><span class='va'>mkindsg</span><span class='op'>$</span><span class='fu'>new</span><span class='op'>(</span>title <span class='op'>=</span> <span class='st'>""</span>, <span class='va'>ds</span>, f_time_norm <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/rep.html'>rep</a></span><span class='op'>(</span><span class='fl'>1</span>, <span class='fu'><a href='https://rdrr.io/r/base/length.html'>length</a></span><span class='op'>(</span><span class='va'>ds</span><span class='op'>)</span><span class='op'>)</span>, <span class='va'>meta</span><span class='op'>)</span></pre><p></div></p>
-
-<h4 class='hasAnchor' id='arguments'><a class='anchor' href='#arguments'></a>Arguments</h4>
-<p><div class="arguments"></p><dl>
-<dt><code>title</code></dt><dd><p>The title</p></dd>
-
-<dt><code>ds</code></dt><dd><p>A list of mkinds objects</p></dd>
-
-<dt><code>f_time_norm</code></dt><dd><p>Time normalisation factors</p></dd>
-
-<dt><code>meta</code></dt><dd><p>The meta data</p></dd>
-
-</dl><p></div></p>
-<p><hr>
-<a id="method-clone"></a></p><h3 class='hasAnchor' id='arguments'><a class='anchor' href='#arguments'></a>Method <code>clone()</code></h3>
-<p>The objects of this class are cloneable with this method.</p><h4 class='hasAnchor' id='arguments'><a class='anchor' href='#arguments'></a>Usage</h4>
-<p><div class="r"></p><pre><span class='va'>mkindsg</span><span class='op'>$</span><span class='fu'>clone</span><span class='op'>(</span>deep <span class='op'>=</span> <span class='cn'>FALSE</span><span class='op'>)</span></pre><p></div></p>
-
-<h4 class='hasAnchor' id='arguments'><a class='anchor' href='#arguments'></a>Arguments</h4>
-<p><div class="arguments"></p><dl>
-<dt><code>deep</code></dt><dd><p>Whether to make a deep clone.</p></dd>
-
-</dl><p></div></p>
-
-
-
- <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
- <pre class="examples"><div class='input'>
-<span class='va'>mdsg</span> <span class='op'>&lt;-</span> <span class='va'>mkindsg</span><span class='op'>$</span><span class='fu'>new</span><span class='op'>(</span><span class='st'>"Experimental X"</span>, <span class='va'>experimental_data_for_UBA_2019</span><span class='op'>[</span><span class='fl'>6</span><span class='op'>:</span><span class='fl'>10</span><span class='op'>]</span><span class='op'>)</span>
-<span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span><span class='op'>(</span><span class='va'>mdsg</span><span class='op'>)</span>
-</div><div class='output co'>#&gt; &lt;mkindsg&gt; holding 5 mkinds objects
-#&gt; Title $title: Experimental X
-#&gt; Occurrence of observed compounds $observed_n:
-#&gt; parent A1
-#&gt; 5 5 </div><div class='input'><span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span><span class='op'>(</span><span class='va'>mdsg</span>, verbose <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
-</div><div class='output co'>#&gt; &lt;mkindsg&gt; holding 5 mkinds objects
-#&gt; Title $title: Experimental X
-#&gt; Occurrence of observed compounds $observed_n:
-#&gt; parent A1
-#&gt; 5 5
-#&gt;
-#&gt; Datasets $ds:
-#&gt; &lt;mkinds&gt; with $title: Soil 6
-#&gt; Observed compounds $observed: parent, A1
-#&gt; Sampling times $sampling_times:
-#&gt; 0, 3, 6, 10, 20, 34, 55, 90, 112, 132
-#&gt; With a maximum of 2 replicates
-#&gt; Time unit: days
-#&gt; Observation unit: \%AR
-#&gt;
-#&gt; &lt;mkinds&gt; with $title: Soil 7
-#&gt; Observed compounds $observed: parent, A1
-#&gt; Sampling times $sampling_times:
-#&gt; 0, 3, 7, 14, 30, 60, 90, 120, 180
-#&gt; With a maximum of 2 replicates
-#&gt; Time unit: days
-#&gt; Observation unit: \%AR
-#&gt;
-#&gt; &lt;mkinds&gt; with $title: Soil 8
-#&gt; Observed compounds $observed: parent, A1
-#&gt; Sampling times $sampling_times:
-#&gt; 0, 1, 3, 8, 14, 27, 48, 70
-#&gt; With a maximum of 2 replicates
-#&gt; Time unit: days
-#&gt; Observation unit: \%AR
-#&gt;
-#&gt; &lt;mkinds&gt; with $title: Soil 9
-#&gt; Observed compounds $observed: parent, A1
-#&gt; Sampling times $sampling_times:
-#&gt; 0, 1, 3, 8, 14, 27, 48, 70, 91, 120
-#&gt; With a maximum of 2 replicates
-#&gt; Time unit: days
-#&gt; Observation unit: \%AR
-#&gt;
-#&gt; &lt;mkinds&gt; with $title: Soil 10
-#&gt; Observed compounds $observed: parent, A1
-#&gt; Sampling times $sampling_times:
-#&gt; 0, 8, 14, 21, 41, 63, 91, 120
-#&gt; With a maximum of 2 replicates
-#&gt; Time unit: days
-#&gt; Observation unit: \%AR </div><div class='input'><span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span><span class='op'>(</span><span class='va'>mdsg</span>, verbose <span class='op'>=</span> <span class='cn'>TRUE</span>, data <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
-</div><div class='output co'>#&gt; &lt;mkindsg&gt; holding 5 mkinds objects
-#&gt; Title $title: Experimental X
-#&gt; Occurrence of observed compounds $observed_n:
-#&gt; parent A1
-#&gt; 5 5
-#&gt;
-#&gt; Datasets $ds:
-#&gt; &lt;mkinds&gt; with $title: Soil 6
-#&gt; Observed compounds $observed: parent, A1
-#&gt; Sampling times $sampling_times:
-#&gt; 0, 3, 6, 10, 20, 34, 55, 90, 112, 132
-#&gt; With a maximum of 2 replicates
-#&gt; Time unit: days
-#&gt; Observation unit: \%AR
-#&gt; time parent A1
-#&gt; 1 0 97.2 NA
-#&gt; 2 0 96.4 NA
-#&gt; 3 3 71.1 4.3
-#&gt; 4 3 69.2 4.6
-#&gt; 5 6 58.1 7.0
-#&gt; 6 6 56.6 7.2
-#&gt; 7 10 44.4 8.2
-#&gt; 8 10 43.4 8.0
-#&gt; 9 20 33.3 11.0
-#&gt; 10 20 29.2 13.7
-#&gt; 11 34 17.6 11.5
-#&gt; 12 34 18.0 12.7
-#&gt; 13 55 10.5 14.9
-#&gt; 14 55 9.3 14.5
-#&gt; 15 90 4.5 12.1
-#&gt; 16 90 4.7 12.3
-#&gt; 17 112 3.0 9.9
-#&gt; 18 112 3.4 10.2
-#&gt; 19 132 2.3 8.8
-#&gt; 20 132 2.7 7.8
-#&gt;
-#&gt; &lt;mkinds&gt; with $title: Soil 7
-#&gt; Observed compounds $observed: parent, A1
-#&gt; Sampling times $sampling_times:
-#&gt; 0, 3, 7, 14, 30, 60, 90, 120, 180
-#&gt; With a maximum of 2 replicates
-#&gt; Time unit: days
-#&gt; Observation unit: \%AR
-#&gt; time parent A1
-#&gt; 1 0 93.6 NA
-#&gt; 2 0 92.3 NA
-#&gt; 3 3 87.0 3.9
-#&gt; 4 3 82.2 3.1
-#&gt; 5 7 74.0 6.9
-#&gt; 6 7 73.9 6.6
-#&gt; 7 14 64.2 10.4
-#&gt; 8 14 69.5 8.3
-#&gt; 9 30 54.0 14.4
-#&gt; 10 30 54.6 13.7
-#&gt; 11 60 41.1 22.1
-#&gt; 12 60 38.4 22.3
-#&gt; 13 90 32.5 27.5
-#&gt; 14 90 35.5 25.4
-#&gt; 15 120 28.1 28.0
-#&gt; 16 120 29.0 26.6
-#&gt; 17 180 26.5 25.8
-#&gt; 18 180 27.6 25.3
-#&gt;
-#&gt; &lt;mkinds&gt; with $title: Soil 8
-#&gt; Observed compounds $observed: parent, A1
-#&gt; Sampling times $sampling_times:
-#&gt; 0, 1, 3, 8, 14, 27, 48, 70
-#&gt; With a maximum of 2 replicates
-#&gt; Time unit: days
-#&gt; Observation unit: \%AR
-#&gt; time parent A1
-#&gt; 1 0 91.9 NA
-#&gt; 2 0 90.8 NA
-#&gt; 3 1 64.9 9.6
-#&gt; 4 1 66.2 7.7
-#&gt; 5 3 43.5 15.0
-#&gt; 6 3 44.1 15.1
-#&gt; 7 8 18.3 21.2
-#&gt; 8 8 18.1 21.1
-#&gt; 9 14 10.2 19.7
-#&gt; 10 14 10.8 18.9
-#&gt; 11 27 4.9 17.5
-#&gt; 12 27 3.3 15.9
-#&gt; 13 48 1.6 9.5
-#&gt; 14 48 1.5 9.8
-#&gt; 15 70 1.1 6.2
-#&gt; 16 70 0.9 6.1
-#&gt;
-#&gt; &lt;mkinds&gt; with $title: Soil 9
-#&gt; Observed compounds $observed: parent, A1
-#&gt; Sampling times $sampling_times:
-#&gt; 0, 1, 3, 8, 14, 27, 48, 70, 91, 120
-#&gt; With a maximum of 2 replicates
-#&gt; Time unit: days
-#&gt; Observation unit: \%AR
-#&gt; time parent A1
-#&gt; 1 0 99.8 NA
-#&gt; 2 0 98.3 NA
-#&gt; 3 1 77.1 4.2
-#&gt; 4 1 77.2 3.9
-#&gt; 5 3 59.0 7.4
-#&gt; 6 3 58.1 7.9
-#&gt; 7 8 27.4 14.5
-#&gt; 8 8 29.2 13.7
-#&gt; 9 14 19.1 14.2
-#&gt; 10 14 29.6 12.2
-#&gt; 11 27 10.1 13.7
-#&gt; 12 27 18.2 13.2
-#&gt; 13 48 4.5 13.6
-#&gt; 14 48 9.1 15.4
-#&gt; 15 70 2.3 10.4
-#&gt; 16 70 2.9 11.6
-#&gt; 17 91 2.0 10.0
-#&gt; 18 91 1.8 9.5
-#&gt; 19 120 2.0 9.1
-#&gt; 20 120 2.2 9.0
-#&gt;
-#&gt; &lt;mkinds&gt; with $title: Soil 10
-#&gt; Observed compounds $observed: parent, A1
-#&gt; Sampling times $sampling_times:
-#&gt; 0, 8, 14, 21, 41, 63, 91, 120
-#&gt; With a maximum of 2 replicates
-#&gt; Time unit: days
-#&gt; Observation unit: \%AR
-#&gt; time parent A1
-#&gt; 1 0 96.1 NA
-#&gt; 2 0 94.3 NA
-#&gt; 3 8 73.9 3.3
-#&gt; 4 8 73.9 3.4
-#&gt; 5 14 69.4 3.9
-#&gt; 6 14 73.1 2.9
-#&gt; 7 21 65.6 6.4
-#&gt; 8 21 65.3 7.2
-#&gt; 9 41 55.9 9.1
-#&gt; 10 41 54.4 8.5
-#&gt; 11 63 47.0 11.7
-#&gt; 12 63 49.3 12.0
-#&gt; 13 91 44.7 13.3
-#&gt; 14 91 46.7 13.2
-#&gt; 15 120 42.1 14.3
-#&gt; 16 120 41.3 12.1</div><div class='input'>
-</div></pre>
+<div class="section">
+<h3 id="public-methods">Public methods<a class="anchor" aria-label="anchor" href="#public-methods"></a></h3>
+
+<ul><li><p><a href="#method-mkindsg-new"><code>mkindsg$new()</code></a></p></li>
+<li><p><a href="#method-mkindsg-clone"><code>mkindsg$clone()</code></a></p></li>
+</ul></div><p></p><hr><a id="method-mkindsg-new"></a><div class="section">
+<h3 id="method-new-">Method <code>new()</code><a class="anchor" aria-label="anchor" href="#method-new-"></a></h3>
+<p>Create a new mkindsg object</p><div class="section">
+<h4 id="usage">Usage<a class="anchor" aria-label="anchor" href="#usage"></a></h4>
+<p></p><div class="r"><div class="sourceCode"><pre><code><span><span class="va"><a href="../reference/mkindsg.html">mkindsg</a></span><span class="op">$</span><span class="fu">new</span><span class="op">(</span>title <span class="op">=</span> <span class="st">""</span>, <span class="va">ds</span>, f_time_norm <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">1</span>, <span class="fu"><a href="https://rdrr.io/r/base/length.html" class="external-link">length</a></span><span class="op">(</span><span class="va">ds</span><span class="op">)</span><span class="op">)</span>, <span class="va">meta</span><span class="op">)</span></span></code></pre></div><p></p></div>
+</div>
+
+<div class="section">
+<h4 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h4>
+<p></p><div class="arguments"><dl><dt><code>title</code></dt>
+<dd><p>The title</p></dd>
+
+
+<dt><code>ds</code></dt>
+<dd><p>A list of mkinds objects</p></dd>
+
+
+<dt><code>f_time_norm</code></dt>
+<dd><p>Time normalisation factors</p></dd>
+
+
+<dt><code>meta</code></dt>
+<dd><p>The meta data</p></dd>
+
+
+</dl><p></p></div>
+</div>
+
+</div><p></p><hr><a id="method-mkindsg-clone"></a><div class="section">
+<h3 id="method-clone-">Method <code>clone()</code><a class="anchor" aria-label="anchor" href="#method-clone-"></a></h3>
+<p>The objects of this class are cloneable with this method.</p><div class="section">
+<h4 id="usage-1">Usage<a class="anchor" aria-label="anchor" href="#usage-1"></a></h4>
+<p></p><div class="r"><div class="sourceCode"><pre><code><span><span class="va">mkindsg</span><span class="op">$</span><span class="fu">clone</span><span class="op">(</span>deep <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></span></code></pre></div><p></p></div>
+</div>
+
+<div class="section">
+<h4 id="arguments-1">Arguments<a class="anchor" aria-label="anchor" href="#arguments-1"></a></h4>
+<p></p><div class="arguments"><dl><dt><code>deep</code></dt>
+<dd><p>Whether to make a deep clone.</p></dd>
+
+
+</dl><p></p></div>
+</div>
+
+</div>
+
+ </div>
+
+ <div id="ref-examples">
+ <h2>Examples</h2>
+ <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span></span></span>
+<span class="r-in"><span><span class="va">mdsg</span> <span class="op">&lt;-</span> <span class="va">mkindsg</span><span class="op">$</span><span class="fu">new</span><span class="op">(</span><span class="st">"Experimental X"</span>, <span class="va">experimental_data_for_UBA_2019</span><span class="op">[</span><span class="fl">6</span><span class="op">:</span><span class="fl">10</span><span class="op">]</span><span class="op">)</span></span></span>
+<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">mdsg</span><span class="op">)</span></span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;mkindsg&gt; holding 5 mkinds objects</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Title $title: Experimental X </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Occurrence of observed compounds $observed_n:</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent A1 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 5 5 </span>
+<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">mdsg</span>, verbose <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;mkindsg&gt; holding 5 mkinds objects</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Title $title: Experimental X </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Occurrence of observed compounds $observed_n:</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent A1 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 5 5 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Datasets $ds:</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;mkinds&gt; with $title: Soil 6 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Observed compounds $observed: parent, A1 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Sampling times $sampling_times:</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 0, 3, 6, 10, 20, 34, 55, 90, 112, 132 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> With a maximum of 2 replicates</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Time unit: days </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Observation unit: \%AR </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;mkinds&gt; with $title: Soil 7 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Observed compounds $observed: parent, A1 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Sampling times $sampling_times:</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 0, 3, 7, 14, 30, 60, 90, 120, 180 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> With a maximum of 2 replicates</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Time unit: days </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Observation unit: \%AR </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;mkinds&gt; with $title: Soil 8 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Observed compounds $observed: parent, A1 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Sampling times $sampling_times:</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 0, 1, 3, 8, 14, 27, 48, 70 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> With a maximum of 2 replicates</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Time unit: days </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Observation unit: \%AR </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;mkinds&gt; with $title: Soil 9 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Observed compounds $observed: parent, A1 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Sampling times $sampling_times:</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 0, 1, 3, 8, 14, 27, 48, 70, 91, 120 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> With a maximum of 2 replicates</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Time unit: days </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Observation unit: \%AR </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;mkinds&gt; with $title: Soil 10 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Observed compounds $observed: parent, A1 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Sampling times $sampling_times:</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 0, 8, 14, 21, 41, 63, 91, 120 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> With a maximum of 2 replicates</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Time unit: days </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Observation unit: \%AR </span>
+<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">mdsg</span>, verbose <span class="op">=</span> <span class="cn">TRUE</span>, data <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;mkindsg&gt; holding 5 mkinds objects</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Title $title: Experimental X </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Occurrence of observed compounds $observed_n:</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent A1 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 5 5 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Datasets $ds:</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;mkinds&gt; with $title: Soil 6 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Observed compounds $observed: parent, A1 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Sampling times $sampling_times:</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 0, 3, 6, 10, 20, 34, 55, 90, 112, 132 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> With a maximum of 2 replicates</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Time unit: days </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Observation unit: \%AR </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> time parent A1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 1 0 97.2 NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 2 0 96.4 NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 3 3 71.1 4.3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 4 3 69.2 4.6</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 5 6 58.1 7.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 6 6 56.6 7.2</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 7 10 44.4 8.2</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 8 10 43.4 8.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 9 20 33.3 11.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 10 20 29.2 13.7</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 11 34 17.6 11.5</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 12 34 18.0 12.7</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 13 55 10.5 14.9</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 14 55 9.3 14.5</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 15 90 4.5 12.1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 16 90 4.7 12.3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 17 112 3.0 9.9</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 18 112 3.4 10.2</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 19 132 2.3 8.8</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 20 132 2.7 7.8</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;mkinds&gt; with $title: Soil 7 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Observed compounds $observed: parent, A1 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Sampling times $sampling_times:</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 0, 3, 7, 14, 30, 60, 90, 120, 180 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> With a maximum of 2 replicates</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Time unit: days </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Observation unit: \%AR </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> time parent A1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 1 0 93.6 NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 2 0 92.3 NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 3 3 87.0 3.9</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 4 3 82.2 3.1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 5 7 74.0 6.9</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 6 7 73.9 6.6</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 7 14 64.2 10.4</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 8 14 69.5 8.3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 9 30 54.0 14.4</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 10 30 54.6 13.7</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 11 60 41.1 22.1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 12 60 38.4 22.3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 13 90 32.5 27.5</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 14 90 35.5 25.4</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 15 120 28.1 28.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 16 120 29.0 26.6</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 17 180 26.5 25.8</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 18 180 27.6 25.3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;mkinds&gt; with $title: Soil 8 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Observed compounds $observed: parent, A1 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Sampling times $sampling_times:</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 0, 1, 3, 8, 14, 27, 48, 70 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> With a maximum of 2 replicates</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Time unit: days </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Observation unit: \%AR </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> time parent A1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 1 0 91.9 NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 2 0 90.8 NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 3 1 64.9 9.6</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 4 1 66.2 7.7</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 5 3 43.5 15.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 6 3 44.1 15.1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 7 8 18.3 21.2</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 8 8 18.1 21.1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 9 14 10.2 19.7</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 10 14 10.8 18.9</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 11 27 4.9 17.5</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 12 27 3.3 15.9</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 13 48 1.6 9.5</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 14 48 1.5 9.8</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 15 70 1.1 6.2</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 16 70 0.9 6.1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;mkinds&gt; with $title: Soil 9 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Observed compounds $observed: parent, A1 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Sampling times $sampling_times:</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 0, 1, 3, 8, 14, 27, 48, 70, 91, 120 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> With a maximum of 2 replicates</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Time unit: days </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Observation unit: \%AR </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> time parent A1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 1 0 99.8 NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 2 0 98.3 NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 3 1 77.1 4.2</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 4 1 77.2 3.9</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 5 3 59.0 7.4</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 6 3 58.1 7.9</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 7 8 27.4 14.5</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 8 8 29.2 13.7</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 9 14 19.1 14.2</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 10 14 29.6 12.2</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 11 27 10.1 13.7</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 12 27 18.2 13.2</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 13 48 4.5 13.6</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 14 48 9.1 15.4</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 15 70 2.3 10.4</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 16 70 2.9 11.6</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 17 91 2.0 10.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 18 91 1.8 9.5</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 19 120 2.0 9.1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 20 120 2.2 9.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;mkinds&gt; with $title: Soil 10 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Observed compounds $observed: parent, A1 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Sampling times $sampling_times:</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 0, 8, 14, 21, 41, 63, 91, 120 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> With a maximum of 2 replicates</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Time unit: days </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Observation unit: \%AR </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> time parent A1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 1 0 96.1 NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 2 0 94.3 NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 3 8 73.9 3.3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 4 8 73.9 3.4</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 5 14 69.4 3.9</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 6 14 73.1 2.9</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 7 21 65.6 6.4</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 8 21 65.3 7.2</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 9 41 55.9 9.1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 10 41 54.4 8.5</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 11 63 47.0 11.7</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 12 63 49.3 12.0</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 13 91 44.7 13.3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 14 91 46.7 13.2</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 15 120 42.1 14.3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 16 120 41.3 12.1</span>
+<span class="r-in"><span></span></span>
+</code></pre></div>
+ </div>
</div>
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