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diff --git a/docs/mkinresplot.html b/docs/mkinresplot.html deleted file mode 100644 index 09f4f7b9..00000000 --- a/docs/mkinresplot.html +++ /dev/null @@ -1,163 +0,0 @@ -<!DOCTYPE html> -<html lang="en"> - <head> - <meta charset="utf-8"> -<title>mkinresplot. mkin 0.9.44.9000</title> -<meta name="viewport" content="width=device-width, initial-scale=1.0"> -<meta name="author" content=" - Johannes Ranke -"> - -<link href="css/bootstrap.css" rel="stylesheet"> -<link href="css/bootstrap-responsive.css" rel="stylesheet"> -<link href="css/highlight.css" rel="stylesheet"> -<link href="css/staticdocs.css" rel="stylesheet"> - -<!--[if lt IE 9]> - <script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script> -<![endif]--> - -<script type="text/x-mathjax-config"> - MathJax.Hub.Config({ - tex2jax: { - inlineMath: [ ['$','$'], ["\\(","\\)"] ], - processEscapes: true - } - }); -</script> -<script type="text/javascript" - src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"> -</script> - </head> - - <body> - <div class="navbar"> - <div class="navbar-inner"> - <div class="container"> - <a class="brand" href="index.html">mkin 0.9.44.9000</a> - <div class="nav"> - <ul class="nav"> - <li><a href="index.html">Home</a></li> - <li><a href="reference.html">Reference</a></li> - </ul> - </div> - </div> - </div> -</div> - - - <div class="container"> - <header> - - </header> - - <h1> - Function to plot residuals stored in an mkin object -</h1> - -<div class="row"> - <div class="span8"> - <h2>Usage</h2> - <pre><span class="functioncall"><a href='mkinresplot.html'>mkinresplot</a></span><span class="keyword">(</span><span class="symbol">object</span><span class="keyword">,</span> - <span class="argument">obs_vars</span> <span class="argument">=</span> <span class="functioncall"><a href='http://www.rdocumentation.org/packages/base/topics/names'>names</a></span><span class="keyword">(</span><span class="symbol">object</span><span class="keyword">$</span><span class="symbol">mkinmod</span><span class="keyword">$</span><span class="symbol">map</span><span class="keyword">)</span><span class="keyword">,</span> - <span class="argument">xlim</span> <span class="argument">=</span> <span class="functioncall"><a href='http://www.rdocumentation.org/packages/base/topics/c'>c</a></span><span class="keyword">(</span><span class="number">0</span><span class="keyword">,</span> <span class="number">1.1</span> <span class="keyword">*</span> <span class="functioncall"><a href='http://www.rdocumentation.org/packages/base/topics/Extremes'>max</a></span><span class="keyword">(</span><span class="symbol">object</span><span class="keyword">$</span><span class="symbol">data</span><span class="keyword">$</span><span class="symbol">time</span><span class="keyword">)</span><span class="keyword">)</span><span class="keyword">,</span> - <span class="argument">xlab</span> <span class="argument">=</span> <span class="string">"Time"</span><span class="keyword">,</span> <span class="argument">ylab</span> <span class="argument">=</span> <span class="string">"Residual"</span><span class="keyword">,</span> - <span class="argument">maxabs</span> <span class="argument">=</span> <span class="string">"auto"</span><span class="keyword">,</span> <span class="argument">legend</span> <span class="argument">=</span> <span class="number">TRUE</span><span class="keyword">,</span> <span class="argument">lpos</span> <span class="argument">=</span> <span class="string">"topright"</span><span class="keyword">,</span> <span class="symbol">...</span><span class="keyword">)</span></pre> - - <h2>Arguments</h2> - <dl> - <dt>object</dt> - <dd> - A fit represented in an <code><a href='mkinfit.html'>mkinfit</a></code> object. -</dd> - <dt>obs_vars</dt> - <dd> - A character vector of names of the observed variables for which residuals - should be plotted. Defaults to all observed variables in the model -</dd> - <dt>xlim</dt> - <dd> - plot range in x direction. - </dd> - <dt>xlab</dt> - <dd> - Label for the x axis. Defaults to "Time [days]". -</dd> - <dt>ylab</dt> - <dd> - Label for the y axis. Defaults to "Residual [% of applied radioactivity]". -</dd> - <dt>maxabs</dt> - <dd> - Maximum absolute value of the residuals. This is used for the scaling of - the y axis and defaults to "auto". -</dd> - <dt>legend</dt> - <dd> - Should a legend be plotted? Defaults to "TRUE". -</dd> - <dt>lpos</dt> - <dd> - Where should the legend be placed? Default is "topright". Will be passed on to - <code><a href='http://www.rdocumentation.org/packages/graphics/topics/legend'>legend</a></code>. </dd> - <dt>...</dt> - <dd> - further arguments passed to <code><a href='http://www.rdocumentation.org/packages/graphics/topics/plot'>plot</a></code>. -</dd> - </dl> - - <div class="Description"> - <h2>Description</h2> - - <p>This function plots the residuals for the specified subset of the - observed variables from an mkinfit object. A combined plot of the fitted - model and the residuals can be obtained using <code><a href='plot.mkinfit.html'>plot.mkinfit</a></code> - using the argument <code>show_residuals = TRUE</code>.</p> - - </div> - - <div class="Value"> - <h2>Value</h2> - - <p><dl> - Nothing is returned by this function, as it is called for its side effect, namely to produce a plot. -</dl></p> - - </div> - - <h2 id="examples">Examples</h2> - <pre class="examples"><div class='input'><span class="symbol">model</span> <span class="assignement"><-</span> <span class="functioncall"><a href='mkinmod.html'>mkinmod</a></span><span class="keyword">(</span><span class="argument">parent</span> <span class="argument">=</span> <span class="functioncall"><a href='mkinsub.html'>mkinsub</a></span><span class="keyword">(</span><span class="string">"SFO"</span><span class="keyword">,</span> <span class="string">"m1"</span><span class="keyword">)</span><span class="keyword">,</span> <span class="argument">m1</span> <span class="argument">=</span> <span class="functioncall"><a href='mkinsub.html'>mkinsub</a></span><span class="keyword">(</span><span class="string">"SFO"</span><span class="keyword">)</span><span class="keyword">)</span></div> -<strong class='message'>Successfully compiled differential equation model from auto-generated C code.</strong> -<div class='input'><span class="symbol">fit</span> <span class="assignement"><-</span> <span class="functioncall"><a href='mkinfit.html'>mkinfit</a></span><span class="keyword">(</span><span class="symbol">model</span><span class="keyword">,</span> <span class="symbol">FOCUS_2006_D</span><span class="keyword">,</span> <span class="argument">quiet</span> <span class="argument">=</span> <span class="number">TRUE</span><span class="keyword">)</span> -<span class="functioncall"><a href='mkinresplot.html'>mkinresplot</a></span><span class="keyword">(</span><span class="symbol">fit</span><span class="keyword">,</span> <span class="string">"m1"</span><span class="keyword">)</span></div> -<p><img src='mkinresplot-4.png' alt='' width='540' height='400' /></p></pre> - </div> - <div class="span4 sidebar"> - <!-- <ul> - <li>mkinresplot</li> - </ul> - <ul> - <li> hplot </li> - </ul> --> - - <h2>See also</h2> - <p><code><a href='mkinplot.html'>mkinplot</a></code>, for a way to plot the data and the fitted lines of the - mkinfit object.</p> - - - - <h2>Author</h2> - - Johannes Ranke - - - </div> -</div> - - <footer> - <p class="pull-right"><a href="#">Back to top</a></p> -<p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. Styled with <a href="https://getbootstrap.com/2.0.4/">bootstrap</a>.</p> - </footer> - </div> - </body> -</html>
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