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Diffstat (limited to 'docs/news')
| -rw-r--r-- | docs/news/index.html | 170 |
1 files changed, 104 insertions, 66 deletions
diff --git a/docs/news/index.html b/docs/news/index.html index c4605ae1..cc837f1e 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -6,7 +6,7 @@ <meta http-equiv="X-UA-Compatible" content="IE=edge"> <meta name="viewport" content="width=device-width, initial-scale=1.0"> -<title>All news • mkin</title> +<title>Changelog • mkin</title> <!-- jquery --> <script src="https://code.jquery.com/jquery-3.1.0.min.js" integrity="sha384-nrOSfDHtoPMzJHjVTdCopGqIqeYETSXhZDFyniQ8ZHcVy08QesyHcnOUpMpqnmWq" crossorigin="anonymous"></script> @@ -21,13 +21,19 @@ <!-- clipboard.js --> <script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script> +<!-- sticky kit --> +<script src="https://cdnjs.cloudflare.com/ajax/libs/sticky-kit/1.1.3/sticky-kit.min.js" integrity="sha256-c4Rlo1ZozqTPE2RLuvbusY3+SU1pQaJC0TjuhygMipw=" crossorigin="anonymous"></script> + <!-- pkgdown --> <link href="../pkgdown.css" rel="stylesheet"> -<script src="../jquery.sticky-kit.min.js"></script> <script src="../pkgdown.js"></script> - - -<meta property="og:title" content="All news" /> + + + +<meta property="og:title" content="Changelog" /> + + + <!-- mathjax --> <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script> @@ -50,8 +56,12 @@ <span class="icon-bar"></span> <span class="icon-bar"></span> </button> - <a class="navbar-brand" href="../index.html">mkin</a> + <span class="navbar-brand"> + <a class="navbar-link" href="../index.html">mkin</a> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.1</span> + </span> </div> + <div id="navbar" class="navbar-collapse collapse"> <ul class="nav navbar-nav"> <li> @@ -92,6 +102,7 @@ <ul class="nav navbar-nav navbar-right"> </ul> + </div><!--/.nav-collapse --> </div><!--/.container --> </div><!--/.navbar --> @@ -99,17 +110,17 @@ </header> - <div class="row"> - - <div class="col-md-9"> +<div class="row"> + <div class="col-md-9 contents"> <div class="page-header"> - <h1>Change log <small>All releases</small></h1> + <h1>Changelog <small></small></h1> + </div> - <div class="contents"> <div id="mkin-0-9-47-1-2018-02-06" class="section level1"> -<h1 class="hasAnchor"> -<a href="#mkin-0-9-47-1-2018-02-06" class="anchor"></a>mkin 0.9.47.1 (2018-02-06)</h1> +<h1 class="page-header"> +<a href="#mkin-0-9-47-1-2018-02-06" class="anchor"></a>mkin 0.9.47.1 (2018-02-06)<small> 2018-02-06 </small> +</h1> <ul> <li><p>Skip some test on CRAN and winbuilder to avoid timeouts</p></li> <li><p>‘test_data_from_UBA_2014’: Added this list of datasets containing experimental data used in the expertise from 2014</p></li> @@ -120,24 +131,27 @@ </ul> </div> <div id="mkin-0-9-46-3-2017-11-16" class="section level1"> -<h1 class="hasAnchor"> -<a href="#mkin-0-9-46-3-2017-11-16" class="anchor"></a>mkin 0.9.46.3 (2017-11-16)</h1> +<h1 class="page-header"> +<a href="#mkin-0-9-46-3-2017-11-16" class="anchor"></a>mkin 0.9.46.3 (2017-11-16)<small> 2017-11-16 </small> +</h1> <ul> <li><p><code>README.md</code>, <code>vignettes/mkin.Rmd</code>: URLs were updated</p></li> <li><p><code>synthetic_data_for_UBA</code>: Add the code used to generate the data in the interest of reproducibility</p></li> </ul> </div> <div id="mkin-0-9-46-2-2017-10-10" class="section level1"> -<h1 class="hasAnchor"> -<a href="#mkin-0-9-46-2-2017-10-10" class="anchor"></a>mkin 0.9.46.2 (2017-10-10)</h1> +<h1 class="page-header"> +<a href="#mkin-0-9-46-2-2017-10-10" class="anchor"></a>mkin 0.9.46.2 (2017-10-10)<small> 2017-10-10 </small> +</h1> <ul> <li><p>Converted the vignette FOCUS_Z from tex/pdf to markdown/html</p></li> <li><p><code>DESCRIPTION</code>: Add ORCID</p></li> </ul> </div> <div id="mkin-0-9-46-1-2017-09-14" class="section level1"> -<h1 class="hasAnchor"> -<a href="#mkin-0-9-46-1-2017-09-14" class="anchor"></a>mkin 0.9.46.1 (2017-09-14)</h1> +<h1 class="page-header"> +<a href="#mkin-0-9-46-1-2017-09-14" class="anchor"></a>mkin 0.9.46.1 (2017-09-14)<small> 2017-09-14 </small> +</h1> <ul> <li><p><code>plot.mkinfit</code>: Fix scaling of residual plots for the case of separate plots for each observed variable</p></li> <li><p><code>plot.mkinfit</code>: Use all data points of the fitted curve for y axis scaling for the case of separate plots for each observed variable</p></li> @@ -145,15 +159,17 @@ </ul> </div> <div id="mkin-0-9-46-2017-07-24" class="section level1"> -<h1 class="hasAnchor"> -<a href="#mkin-0-9-46-2017-07-24" class="anchor"></a>mkin 0.9.46 (2017-07-24)</h1> +<h1 class="page-header"> +<a href="#mkin-0-9-46-2017-07-24" class="anchor"></a>mkin 0.9.46 (2017-07-24)<small> 2017-07-29 </small> +</h1> <ul> <li>Remove <code>test_FOMC_ill-defined.R</code> as it is too platform dependent</li> </ul> </div> <div id="mkin-0-9-45-2-2017-07-24" class="section level1"> -<h1 class="hasAnchor"> -<a href="#mkin-0-9-45-2-2017-07-24" class="anchor"></a>mkin 0.9.45.2 (2017-07-24)</h1> +<h1 class="page-header"> +<a href="#mkin-0-9-45-2-2017-07-24" class="anchor"></a>mkin 0.9.45.2 (2017-07-24)<small> 2017-07-22 </small> +</h1> <ul> <li><p>Rename <code>twa</code> to <code>max_twa_parent</code> to avoid conflict with <code>twa</code> from my <code>pfm</code> package</p></li> <li><p>Update URLs in documentation</p></li> @@ -162,8 +178,9 @@ </ul> </div> <div id="mkin-0-9-45-1-2016-12-20" class="section level1"> -<h1 class="hasAnchor"> -<a href="#mkin-0-9-45-1-2016-12-20" class="anchor"></a>mkin 0.9.45.1 (2016-12-20)</h1> +<h1 class="page-header"> +<a href="#mkin-0-9-45-1-2016-12-20" class="anchor"></a>mkin 0.9.45.1 (2016-12-20)<small> Unreleased </small> +</h1> <div id="new-features" class="section level2"> <h2 class="hasAnchor"> <a href="#new-features" class="anchor"></a>New features</h2> @@ -173,8 +190,9 @@ </div> </div> <div id="mkin-0-9-45-2016-12-08" class="section level1"> -<h1 class="hasAnchor"> -<a href="#mkin-0-9-45-2016-12-08" class="anchor"></a>mkin 0.9.45 (2016-12-08)</h1> +<h1 class="page-header"> +<a href="#mkin-0-9-45-2016-12-08" class="anchor"></a>mkin 0.9.45 (2016-12-08)<small> 2016-12-08 </small> +</h1> <div id="minor-changes" class="section level2"> <h2 class="hasAnchor"> <a href="#minor-changes" class="anchor"></a>Minor changes</h2> @@ -186,8 +204,9 @@ </div> </div> <div id="mkin-0-9-44-2016-06-29" class="section level1"> -<h1 class="hasAnchor"> -<a href="#mkin-0-9-44-2016-06-29" class="anchor"></a>mkin 0.9.44 (2016-06-29)</h1> +<h1 class="page-header"> +<a href="#mkin-0-9-44-2016-06-29" class="anchor"></a>mkin 0.9.44 (2016-06-29)<small> 2016-06-29 </small> +</h1> <div id="bug-fixes" class="section level2"> <h2 class="hasAnchor"> <a href="#bug-fixes" class="anchor"></a>Bug fixes</h2> @@ -197,8 +216,9 @@ </div> </div> <div id="mkin-0-9-43-2016-06-28" class="section level1"> -<h1 class="hasAnchor"> -<a href="#mkin-0-9-43-2016-06-28" class="anchor"></a>mkin 0.9.43 (2016-06-28)</h1> +<h1 class="page-header"> +<a href="#mkin-0-9-43-2016-06-28" class="anchor"></a>mkin 0.9.43 (2016-06-28)<small> 2016-06-28 </small> +</h1> <div id="major-changes" class="section level2"> <h2 class="hasAnchor"> <a href="#major-changes" class="anchor"></a>Major changes</h2> @@ -235,8 +255,9 @@ </div> </div> <div id="mkin-0-9-42-2016-03-25" class="section level1"> -<h1 class="hasAnchor"> -<a href="#mkin-0-9-42-2016-03-25" class="anchor"></a>mkin 0.9.42 (2016-03-25)</h1> +<h1 class="page-header"> +<a href="#mkin-0-9-42-2016-03-25" class="anchor"></a>mkin 0.9.42 (2016-03-25)<small> 2016-03-25 </small> +</h1> <div id="major-changes-1" class="section level2"> <h2 class="hasAnchor"> <a href="#major-changes-1" class="anchor"></a>Major changes</h2> @@ -255,8 +276,9 @@ </div> </div> <div id="mkin-0-9-41-2015-11-09" class="section level1"> -<h1 class="hasAnchor"> -<a href="#mkin-0-9-41-2015-11-09" class="anchor"></a>mkin 0.9-41 (2015-11-09)</h1> +<h1 class="page-header"> +<a href="#mkin-0-9-41-2015-11-09" class="anchor"></a>mkin 0.9-41 (2015-11-09)<small> 2015-11-09 </small> +</h1> <div id="minor-changes-3" class="section level2"> <h2 class="hasAnchor"> <a href="#minor-changes-3" class="anchor"></a>Minor changes</h2> @@ -277,8 +299,9 @@ </div> </div> <div id="mkin-0-9-40-2015-07-21" class="section level1"> -<h1 class="hasAnchor"> -<a href="#mkin-0-9-40-2015-07-21" class="anchor"></a>mkin 0.9-40 (2015-07-21)</h1> +<h1 class="page-header"> +<a href="#mkin-0-9-40-2015-07-21" class="anchor"></a>mkin 0.9-40 (2015-07-21)<small> 2015-07-21 </small> +</h1> <div id="bug-fixes-3" class="section level2"> <h2 class="hasAnchor"> <a href="#bug-fixes-3" class="anchor"></a>Bug fixes</h2> @@ -297,8 +320,9 @@ </div> </div> <div id="mkin-0-9-39-2015-06-26" class="section level1"> -<h1 class="hasAnchor"> -<a href="#mkin-0-9-39-2015-06-26" class="anchor"></a>mkin 0.9-39 (2015-06-26)</h1> +<h1 class="page-header"> +<a href="#mkin-0-9-39-2015-06-26" class="anchor"></a>mkin 0.9-39 (2015-06-26)<small> 2015-06-26 </small> +</h1> <div id="major-changes-2" class="section level2"> <h2 class="hasAnchor"> <a href="#major-changes-2" class="anchor"></a>Major changes</h2> @@ -317,8 +341,9 @@ </div> </div> <div id="mkin-0-9-38-2015-06-24" class="section level1"> -<h1 class="hasAnchor"> -<a href="#mkin-0-9-38-2015-06-24" class="anchor"></a>mkin 0.9-38 (2015-06-24)</h1> +<h1 class="page-header"> +<a href="#mkin-0-9-38-2015-06-24" class="anchor"></a>mkin 0.9-38 (2015-06-24)<small> 2015-06-23 </small> +</h1> <div id="minor-changes-4" class="section level2"> <h2 class="hasAnchor"> <a href="#minor-changes-4" class="anchor"></a>Minor changes</h2> @@ -337,8 +362,9 @@ </div> </div> <div id="mkin-0-9-36-2015-06-21" class="section level1"> -<h1 class="hasAnchor"> -<a href="#mkin-0-9-36-2015-06-21" class="anchor"></a>mkin 0.9-36 (2015-06-21)</h1> +<h1 class="page-header"> +<a href="#mkin-0-9-36-2015-06-21" class="anchor"></a>mkin 0.9-36 (2015-06-21)<small> 2015-06-21 </small> +</h1> <div id="major-changes-3" class="section level2"> <h2 class="hasAnchor"> <a href="#major-changes-3" class="anchor"></a>Major changes</h2> @@ -358,8 +384,9 @@ </div> </div> <div id="mkin-0-9-35-2015-05-15" class="section level1"> -<h1 class="hasAnchor"> -<a href="#mkin-0-9-35-2015-05-15" class="anchor"></a>mkin 0.9-35 (2015-05-15)</h1> +<h1 class="page-header"> +<a href="#mkin-0-9-35-2015-05-15" class="anchor"></a>mkin 0.9-35 (2015-05-15)<small> 2015-05-15 </small> +</h1> <div id="major-changes-4" class="section level2"> <h2 class="hasAnchor"> <a href="#major-changes-4" class="anchor"></a>Major changes</h2> @@ -389,8 +416,9 @@ </div> </div> <div id="mkin-0-9-34-2014-11-22" class="section level1"> -<h1 class="hasAnchor"> -<a href="#mkin-0-9-34-2014-11-22" class="anchor"></a>mkin 0.9-34 (2014-11-22)</h1> +<h1 class="page-header"> +<a href="#mkin-0-9-34-2014-11-22" class="anchor"></a>mkin 0.9-34 (2014-11-22)<small> 2014-11-22 </small> +</h1> <div id="new-features-2" class="section level2"> <h2 class="hasAnchor"> <a href="#new-features-2" class="anchor"></a>New features</h2> @@ -410,8 +438,9 @@ </div> </div> <div id="mkin-0-9-33-2014-10-22" class="section level1"> -<h1 class="hasAnchor"> -<a href="#mkin-0-9-33-2014-10-22" class="anchor"></a>mkin 0.9-33 (2014-10-22)</h1> +<h1 class="page-header"> +<a href="#mkin-0-9-33-2014-10-22" class="anchor"></a>mkin 0.9-33 (2014-10-22)<small> 2014-10-12 </small> +</h1> <div id="new-features-3" class="section level2"> <h2 class="hasAnchor"> <a href="#new-features-3" class="anchor"></a>New features</h2> @@ -442,8 +471,9 @@ </div> </div> <div id="mkin-0-9-32-2014-07-24" class="section level1"> -<h1 class="hasAnchor"> -<a href="#mkin-0-9-32-2014-07-24" class="anchor"></a>mkin 0.9-32 (2014-07-24)</h1> +<h1 class="page-header"> +<a href="#mkin-0-9-32-2014-07-24" class="anchor"></a>mkin 0.9-32 (2014-07-24)<small> 2014-07-24 </small> +</h1> <div id="new-features-4" class="section level2"> <h2 class="hasAnchor"> <a href="#new-features-4" class="anchor"></a>New features</h2> @@ -478,8 +508,9 @@ </div> </div> <div id="mkin-0-9-31-2014-07-14" class="section level1"> -<h1 class="hasAnchor"> -<a href="#mkin-0-9-31-2014-07-14" class="anchor"></a>mkin 0.9-31 (2014-07-14)</h1> +<h1 class="page-header"> +<a href="#mkin-0-9-31-2014-07-14" class="anchor"></a>mkin 0.9-31 (2014-07-14)<small> 2014-07-14 </small> +</h1> <div id="bug-fixes-9" class="section level2"> <h2 class="hasAnchor"> <a href="#bug-fixes-9" class="anchor"></a>Bug fixes</h2> @@ -489,8 +520,9 @@ </div> </div> <div id="mkin-0-9-30-2014-07-11" class="section level1"> -<h1 class="hasAnchor"> -<a href="#mkin-0-9-30-2014-07-11" class="anchor"></a>mkin 0.9-30 (2014-07-11)</h1> +<h1 class="page-header"> +<a href="#mkin-0-9-30-2014-07-11" class="anchor"></a>mkin 0.9-30 (2014-07-11)<small> 2014-07-11 </small> +</h1> <div id="new-features-5" class="section level2"> <h2 class="hasAnchor"> <a href="#new-features-5" class="anchor"></a>New features</h2> @@ -520,8 +552,9 @@ </div> </div> <div id="mkin-0-9-29-2014-06-27" class="section level1"> -<h1 class="hasAnchor"> -<a href="#mkin-0-9-29-2014-06-27" class="anchor"></a>mkin 0.9-29 (2014-06-27)</h1> +<h1 class="page-header"> +<a href="#mkin-0-9-29-2014-06-27" class="anchor"></a>mkin 0.9-29 (2014-06-27)<small> 2014-06-27 </small> +</h1> <ul> <li><p>R/mkinresplot.R: Make it possible to specify <code>xlim</code></p></li> <li><p>R/geometric_mean.R, man/geometric_mean.Rd: Add geometric mean function</p></li> @@ -529,8 +562,9 @@ </ul> </div> <div id="mkin-0-9-28-2014-05-20" class="section level1"> -<h1 class="hasAnchor"> -<a href="#mkin-0-9-28-2014-05-20" class="anchor"></a>mkin 0.9-28 (2014-05-20)</h1> +<h1 class="page-header"> +<a href="#mkin-0-9-28-2014-05-20" class="anchor"></a>mkin 0.9-28 (2014-05-20)<small> 2014-05-20 </small> +</h1> <ul> <li><p>Do not backtransform confidence intervals for formation fractions if more than one compound is formed, as such parameters only define the pathways as a set</p></li> <li><p>Add historical remarks and some background to the main package vignette</p></li> @@ -538,8 +572,9 @@ </ul> </div> <div id="mkin-0-9-27-2014-05-10" class="section level1"> -<h1 class="hasAnchor"> -<a href="#mkin-0-9-27-2014-05-10" class="anchor"></a>mkin 0.9-27 (2014-05-10)</h1> +<h1 class="page-header"> +<a href="#mkin-0-9-27-2014-05-10" class="anchor"></a>mkin 0.9-27 (2014-05-10)<small> 2014-05-10 </small> +</h1> <ul> <li><p>Fork the GUI into a separate package <a href="http://github.com/jranke/gmkin">gmkin</a></p></li> <li><p>DESCRIPTION, NAMESPACE, TODO: Adapt and add copyright information</p></li> @@ -561,8 +596,9 @@ </ul> </div> <div id="mkin-0-9-24-2013-11-06" class="section level1"> -<h1 class="hasAnchor"> -<a href="#mkin-0-9-24-2013-11-06" class="anchor"></a>mkin 0.9-24 (2013-11-06)</h1> +<h1 class="page-header"> +<a href="#mkin-0-9-24-2013-11-06" class="anchor"></a>mkin 0.9-24 (2013-11-06)<small> 2013-11-06 </small> +</h1> <ul> <li><p>Bugfix re-enabling the fixing of any combination of initial values for state variables</p></li> <li><p>Default values for kinetic rate constants are not all 0.1 any more but are “salted” with a small increment to avoid numeric artefacts with the eigenvalue based solutions</p></li> @@ -570,8 +606,9 @@ </ul> </div> <div id="mkin-0-9-22-2013-10-26" class="section level1"> -<h1 class="hasAnchor"> -<a href="#mkin-0-9-22-2013-10-26" class="anchor"></a>mkin 0.9-22 (2013-10-26)</h1> +<h1 class="page-header"> +<a href="#mkin-0-9-22-2013-10-26" class="anchor"></a>mkin 0.9-22 (2013-10-26)<small> 2013-10-26 </small> +</h1> <ul> <li><p>Get rid of the optimisation step in <code>mkinerrmin</code> - this was unnecessary. Thanks to KinGUII for the inspiration - actually this is equation 6-2 in FOCUS kinetics p. 91 that I had overlooked originally</p></li> <li><p>Fix <code>plot.mkinfit</code> as it passed graphical arguments like main to the solver</p></li> @@ -587,7 +624,6 @@ </ul> <p>For a detailed list of changes to the mkin source please consult the commit history on <a href="http://github.com/jranke/mkin" class="uri">http://github.com/jranke/mkin</a></p> </div> - </div> </div> <div class="col-md-3 hidden-xs hidden-sm" id="sidebar"> @@ -639,6 +675,8 @@ </footer> </div> + + </body> </html> |