diff options
Diffstat (limited to 'docs/reference/Extract.mmkin.html')
| -rw-r--r-- | docs/reference/Extract.mmkin.html | 57 |
1 files changed, 36 insertions, 21 deletions
diff --git a/docs/reference/Extract.mmkin.html b/docs/reference/Extract.mmkin.html index 5d4eca29..11738484 100644 --- a/docs/reference/Extract.mmkin.html +++ b/docs/reference/Extract.mmkin.html @@ -18,12 +18,19 @@ <!-- Font Awesome icons --> <link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous"> +<!-- clipboard.js --> +<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script> <!-- pkgdown --> <link href="../pkgdown.css" rel="stylesheet"> <script src="../jquery.sticky-kit.min.js"></script> <script src="../pkgdown.js"></script> + + +<meta property="og:title" content="Subsetting method for mmkin objects — [.mmkin" /> +<meta property="og:description" content="Subsetting method for mmkin objects." /> +<meta name="twitter:card" content="summary" /> <!-- mathjax --> <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script> @@ -70,6 +77,9 @@ <a href="../articles/FOCUS_L.html">Example evaluation of FOCUS Laboratory Data L1 to L3</a> </li> <li> + <a href="../articles/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a> + </li> + <li> <a href="../articles/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a> </li> <li> @@ -83,12 +93,7 @@ </ul> <ul class="nav navbar-nav navbar-right"> - <li> - <a href="http://github.com/jranke/mkin"> - <span class="fa fa-github fa-lg"></span> - - </a> -</li> + </ul> </div><!--/.nav-collapse --> </div><!--/.container --> @@ -147,16 +152,16 @@ <span class='kw'>cores</span> <span class='kw'>=</span> <span class='fl'>1</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>) <span class='no'>fits</span>[<span class='st'>"FOMC"</span>, ]</div><div class='output co'>#> dataset #> model B C -#> FOMC List,42 List,42 +#> FOMC List,45 List,45 #> attr(,"class") #> [1] "mmkin"</div><div class='input'> <span class='no'>fits</span>[, <span class='st'>"B"</span>]</div><div class='output co'>#> dataset #> model B -#> SFO List,42 -#> FOMC List,42 +#> SFO List,45 +#> FOMC List,45 #> attr(,"class") #> [1] "mmkin"</div><div class='input'> <span class='no'>fits</span>[<span class='st'>"SFO"</span>, <span class='st'>"B"</span>]</div><div class='output co'>#> dataset #> model B -#> SFO List,42 +#> SFO List,45 #> attr(,"class") #> [1] "mmkin"</div><div class='input'> <span class='fu'>head</span>( @@ -164,7 +169,7 @@ <span class='no'>fits</span><span class='kw'>[[</span><span class='st'>"FOMC"</span>, <span class='st'>"B"</span>]] )</div><div class='output co'>#> $par #> parent_0 log_alpha log_beta -#> 99.666192 2.549849 5.050586 +#> 99.666193 2.549849 5.050586 #> #> $ssr #> [1] 28.58291 @@ -180,7 +185,7 @@ #> 25 78 #> #> $counts -#> [1] "both X-convergence and relative convergence (5)" +#> [1] "relative convergence (4)" #> </div><div class='input'> <span class='fu'>head</span>( <span class='co'># The same can be achieved by</span> @@ -258,7 +263,7 @@ #> #> $time #> user system elapsed -#> 0.064 0.000 0.063 +#> 0.058 0.000 0.057 #> #> $mkinmod #> <mkinmod> model generated with @@ -398,7 +403,7 @@ #> { #> assign("calls", calls + 1, inherits = TRUE) #> if (trace_parms) -#> cat(P, "\\n") +#> cat(P, "\n") #> if (length(state.ini.optim) > 0) { #> odeini <- c(P[1:length(state.ini.optim)], state.ini.fixed) #> names(odeini) <- c(state.ini.optim.boxnames, state.ini.fixed.boxnames) @@ -420,7 +425,7 @@ #> if (mC$model < cost.old) { #> if (!quiet) #> cat("Model cost at call ", calls, ": ", mC$model, -#> "\\n") +#> "\n") #> if (plot) { #> outtimes_plot = seq(min(observed$time), max(observed$time), #> length.out = 100) @@ -447,8 +452,8 @@ #> } #> return(mC) #> } -#> <bytecode: 0x560110508c60> -#> <environment: 0x56010f8d8c30> +#> <bytecode: 0x55555ad80908> +#> <environment: 0x55555b1b4b90> #> #> $cost_notrans #> function (P) @@ -470,8 +475,8 @@ #> scaleVar = scaleVar) #> return(mC) #> } -#> <bytecode: 0x56010fede550> -#> <environment: 0x56010f8d8c30> +#> <bytecode: 0x55555b174428> +#> <environment: 0x55555b1b4b90> #> #> $hessian_notrans #> parent_0 k_parent_sink @@ -512,6 +517,10 @@ #> $weight.ini #> [1] "none" #> +#> $tc.ini +#> sigma_low rsd_high +#> 0.50 0.07 +#> #> $reweight.tol #> [1] 1e-08 #> @@ -534,7 +543,13 @@ #> 99.17407 #> #> $date -#> [1] "Sat Jul 29 15:14:04 2017" +#> [1] "Thu Mar 1 14:26:09 2018" +#> +#> $version +#> [1] "0.9.47.1" +#> +#> $Rversion +#> [1] "3.4.3" #> #> attr(,"class") #> [1] "mkinfit" "modFit" @@ -563,7 +578,7 @@ </div> <div class="pkgdown"> - <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p> + <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p> </div> </footer> |