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-rw-r--r--docs/reference/Extract.mmkin.html44
1 files changed, 28 insertions, 16 deletions
diff --git a/docs/reference/Extract.mmkin.html b/docs/reference/Extract.mmkin.html
index 6a75a530..1b198233 100644
--- a/docs/reference/Extract.mmkin.html
+++ b/docs/reference/Extract.mmkin.html
@@ -49,13 +49,28 @@
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li>
- <a href="../reference/index.html">Reference</a>
+ <a href="../reference/index.html">Function reference</a>
</li>
-<li>
- <a href="../articles/index.html">Articles</a>
-</li>
-<li>
- <a href="../news/index.html">News</a>
+<li class="dropdown">
+ <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
+ Articles
+
+ <span class="caret"></span>
+ </a>
+ <ul class="dropdown-menu" role="menu">
+ <li>
+ <a href="../articles/mkin.html">Introduction to mkin</a>
+ </li>
+ <li>
+ <a href="../articles/FOCUS_D.html">Example evaluation of FOCUS Example Dataset D</a>
+ </li>
+ <li>
+ <a href="../articles/FOCUS_L.html">Example evaluation of FOCUS Laboratory Data L1 to L3</a>
+ </li>
+ <li>
+ <a href="../articles/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a>
+ </li>
+ </ul>
</li>
</ul>
@@ -128,12 +143,7 @@
<span class='fu'>head</span>(
<span class='co'># This extracts an mkinfit object with lots of components</span>
<span class='no'>fits</span><span class='kw'>[[</span><span class='st'>"FOMC"</span>, <span class='st'>"B"</span>]]
- )</div><div class='output co'>#&gt; <span class='message'></span>
-#&gt; <span class='message'>Attaching package: ‘utils’</span></div><div class='output co'>#&gt; <span class='message'>The following objects are masked from ‘devtools_shims’:</span>
-#&gt; <span class='message'></span>
-#&gt; <span class='message'> ?, help</span></div><div class='output co'>#&gt; <span class='message'>The following object is masked from ‘package:inline’:</span>
-#&gt; <span class='message'></span>
-#&gt; <span class='message'> package.skeleton</span></div><div class='output co'>#&gt; $par
+ )</div><div class='output co'>#&gt; $par
#&gt; parent_0 log_alpha log_beta
#&gt; 99.666193 2.549849 5.050586
#&gt;
@@ -229,7 +239,7 @@
#&gt;
#&gt; $time
#&gt; user system elapsed
-#&gt; 0.068 0.000 0.070
+#&gt; 0.064 0.000 0.066
#&gt;
#&gt; $mkinmod
#&gt; &lt;mkinmod&gt; model generated with
@@ -238,6 +248,8 @@
#&gt; $parent
#&gt; $type: SFO; $sink: TRUE
#&gt; Coefficient matrix $coefmat available
+#&gt; Differential equations:
+#&gt; d_parent/dt = - k_parent_sink * parent
#&gt;
#&gt; $observed
#&gt; name time value
@@ -416,7 +428,7 @@
#&gt; }
#&gt; return(mC)
#&gt; }
-#&gt; &lt;environment: 0x3a3e8a8&gt;
+#&gt; &lt;environment: 0x374d908&gt;
#&gt;
#&gt; $cost_notrans
#&gt; function (P)
@@ -438,7 +450,7 @@
#&gt; scaleVar = scaleVar)
#&gt; return(mC)
#&gt; }
-#&gt; &lt;environment: 0x3a3e8a8&gt;
+#&gt; &lt;environment: 0x374d908&gt;
#&gt;
#&gt; $hessian_notrans
#&gt; parent_0 k_parent_sink
@@ -501,7 +513,7 @@
#&gt; 99.17407
#&gt;
#&gt; $date
-#&gt; [1] &quot;Fri Nov 18 16:03:57 2016&quot;
+#&gt; [1] &quot;Fri Nov 18 16:45:27 2016&quot;
#&gt;
#&gt; attr(,&quot;class&quot;)
#&gt; [1] &quot;mkinfit&quot; &quot;modFit&quot;

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