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1 files changed, 54 insertions, 35 deletions
diff --git a/docs/reference/IORE.solution.html b/docs/reference/IORE.solution.html
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<a href="../reference/index.html">Reference</a>
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- <div class="page-header">
- <h1> Indeterminate order rate equation kinetics </h1>
-</div>
+ <div class="row">
+ <div class="col-md-9 contents">
+ <div class="page-header">
+ <h1> Indeterminate order rate equation kinetics </h1>
+ </div>
-<div class="row">
- <div class="col-md-9">
<p>Function describing exponential decline from a defined starting value, with
a concentration dependent rate constant.</p>
@@ -83,7 +84,7 @@
<pre><span class='fu'>IORE.solution</span>(<span class='no'>t</span>, <span class='no'>parent.0</span>, <span class='no'>k__iore</span>, <span class='no'>N</span>)</pre>
- <h2>Arguments</h2>
+ <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a> Arguments</h2>
<dl class="dl-horizontal">
<dt>t</dt>
<dd> Time. </dd>
@@ -95,53 +96,71 @@
<dd> Exponent describing the nonlinearity of the rate equation </dd>
</dl>
- <div class="Note">
- <h2>Note</h2>
+ <h2 class="hasAnchor" id="note"><a class="anchor" href="#note"></a>Note</h2>
- <p>The solution of the IORE kinetic model reduces to the
- <code>SFO.solution</code> if N = 1.
+ <p>The solution of the IORE kinetic model reduces to the
+ <code><a href='SFO.solution.html'>SFO.solution</a></code> if N = 1.
The parameters of the IORE model can be transformed to equivalent parameters
of the FOMC mode - see the NAFTA guidance for details.</p>
- </div>
-
- <div class="Value">
- <h2>Value</h2>
-
- <p>The value of the response variable at time <code>t</code>.</p>
- </div>
+
+ <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
- <div class="References">
- <h2>References</h2>
+ <p>The value of the response variable at time <code>t</code>.</p>
+
+ <h2 class="hasAnchor" id="references"><a class="anchor" href="#references"></a>References</h2>
- <p>NAFTA Technical Working Group on Pesticides (not dated) Guidance for
+ <p>NAFTA Technical Working Group on Pesticides (not dated) Guidance for
Evaluating and Calculating Degradation Kinetics in Environmental
Media</p>
- </div>
- <h2 id="examples">Examples</h2>
+
+ <h2 class="hasAnchor" id="examples">
+ <a class="anchor" href="#examples"></a>
+ Examples
+ </h2>
<pre class="examples"><div class='input'> <span class='fu'>plot</span>(<span class='kw'>function</span>(<span class='no'>x</span>) <span class='fu'>IORE.solution</span>(<span class='no'>x</span>, <span class='fl'>100</span>, <span class='fl'>0.2</span>, <span class='fl'>1.3</span>), <span class='fl'>0</span>, <span class='fl'>2</span>,
- <span class='kw'>ylim</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='fl'>0</span>, <span class='fl'>100</span>))</div><img src='unknown-2.png' alt='' width='540' height='400' /><div class='input'> <span class='no'>fit.fomc</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinfit</span>(<span class='st'>"FOMC"</span>, <span class='no'>FOCUS_2006_C</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
- <span class='no'>fit.iore</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinfit</span>(<span class='st'>"IORE"</span>, <span class='no'>FOCUS_2006_C</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
- <span class='no'>fit.iore.deS</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinfit</span>(<span class='st'>"IORE"</span>, <span class='no'>FOCUS_2006_C</span>, <span class='kw'>solution_type</span> <span class='kw'>=</span> <span class='st'>"deSolve"</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
+ <span class='kw'>ylim</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='fl'>0</span>, <span class='fl'>100</span>))</div><img src='IORE.solution-2.png' alt='' width='540' height='400' /><div class='input'> <span class='no'>fit.fomc</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='st'>"FOMC"</span>, <span class='no'>FOCUS_2006_C</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
+ <span class='no'>fit.iore</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='st'>"IORE"</span>, <span class='no'>FOCUS_2006_C</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
+ <span class='no'>fit.iore.deS</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='st'>"IORE"</span>, <span class='no'>FOCUS_2006_C</span>, <span class='kw'>solution_type</span> <span class='kw'>=</span> <span class='st'>"deSolve"</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
<span class='fu'>print</span>(<span class='fu'>data.frame</span>(<span class='fu'>coef</span>(<span class='no'>fit.fomc</span>), <span class='fu'>coef</span>(<span class='no'>fit.iore</span>), <span class='fu'>coef</span>(<span class='no'>fit.iore.deS</span>),
<span class='kw'>row.names</span> <span class='kw'>=</span> <span class='fu'>paste</span>(<span class='st'>"model par"</span>, <span class='fl'>1</span>:<span class='fl'>3</span>)))</div><div class='output co'>#&gt; coef.fit.fomc. coef.fit.iore. coef.fit.iore.deS.
#&gt; model par 1 85.87489063 85.874891 85.874890
#&gt; model par 2 0.05192238 -4.826631 -4.826631
#&gt; model par 3 0.65096665 1.949403 1.949403
-#&gt; </div><div class='input'> <span class='fu'>print</span>(<span class='fu'>rbind</span>(<span class='kw'>fomc</span> <span class='kw'>=</span> <span class='fu'>endpoints</span>(<span class='no'>fit.fomc</span>)$<span class='no'>distimes</span>, <span class='kw'>iore</span> <span class='kw'>=</span> <span class='fu'>endpoints</span>(<span class='no'>fit.iore</span>)$<span class='no'>distimes</span>,
- <span class='kw'>iore.deS</span> <span class='kw'>=</span> <span class='fu'>endpoints</span>(<span class='no'>fit.iore</span>)$<span class='no'>distimes</span>))</div><div class='output co'>#&gt; DT50 DT90 DT50back
+#&gt; </div><div class='input'> <span class='fu'>print</span>(<span class='fu'>rbind</span>(<span class='kw'>fomc</span> <span class='kw'>=</span> <span class='fu'><a href='endpoints.html'>endpoints</a></span>(<span class='no'>fit.fomc</span>)$<span class='no'>distimes</span>, <span class='kw'>iore</span> <span class='kw'>=</span> <span class='fu'><a href='endpoints.html'>endpoints</a></span>(<span class='no'>fit.iore</span>)$<span class='no'>distimes</span>,
+ <span class='kw'>iore.deS</span> <span class='kw'>=</span> <span class='fu'><a href='endpoints.html'>endpoints</a></span>(<span class='no'>fit.iore</span>)$<span class='no'>distimes</span>))</div><div class='output co'>#&gt; DT50 DT90 DT50back
#&gt; fomc 1.785233 15.1479 4.559973
#&gt; iore 1.785233 15.1479 4.559973
#&gt; iore.deS 1.785233 15.1479 4.559973
#&gt; </div></pre>
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- <div class="col-md-3">
+ <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
+ <h2>Contents</h2>
+ <ul class="nav nav-pills nav-stacked">
+ <li><a href="#arguments">Arguments</a></li>
+
+ <li><a href="#note">Note</a></li>
+
+ <li><a href="#value">Value</a></li>
+
+ <li><a href="#references">References</a></li>
+
+ <li><a href="#examples">Examples</a></li>
+ </ul>
+
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