aboutsummaryrefslogtreecommitdiff
path: root/docs/reference/NAFTA_SOP_2015.html
diff options
context:
space:
mode:
Diffstat (limited to 'docs/reference/NAFTA_SOP_2015.html')
-rw-r--r--docs/reference/NAFTA_SOP_2015.html42
1 files changed, 24 insertions, 18 deletions
diff --git a/docs/reference/NAFTA_SOP_2015.html b/docs/reference/NAFTA_SOP_2015.html
index 97674400..301bf684 100644
--- a/docs/reference/NAFTA_SOP_2015.html
+++ b/docs/reference/NAFTA_SOP_2015.html
@@ -72,7 +72,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.50.2</span>
+ <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.0.0</span>
</span>
</div>
@@ -109,6 +109,9 @@
<li>
<a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
</li>
+ <li>
+ <a href="../articles/web_only/benchmarks.html">Some benchmark timings</a>
+ </li>
</ul>
</li>
<li>
@@ -117,8 +120,8 @@
</ul>
<ul class="nav navbar-nav navbar-right">
<li>
- <a href="http://github.com/jranke/mkin/">
- <span class="fab fa fab fa-github fa-lg"></span>
+ <a href="https://github.com/jranke/mkin/">
+ <span class="fab fa-github fa-lg"></span>
</a>
</li>
@@ -144,13 +147,13 @@
<p>Data taken from US EPA (2015), p. 19 and 23.</p>
</div>
- <pre class="usage"><span class='no'>NAFTA_SOP_Appendix_B</span>
- <span class='no'>NAFTA_SOP_Appendix_D</span></pre>
+ <pre class="usage"><span class='va'>NAFTA_SOP_Appendix_B</span>
+ <span class='va'>NAFTA_SOP_Appendix_D</span></pre>
<h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2>
- <p>2 datasets with observations on the following variables.</p><dl'>
+ <p>2 datasets with observations on the following variables.</p><dl>
<dt><code>name</code></dt><dd><p>a factor containing the name of the observed variable</p></dd>
<dt><code>time</code></dt><dd><p>a numeric vector containing time points</p></dd>
<dt><code>value</code></dt><dd><p>a numeric vector containing concentrations</p></dd>
@@ -169,7 +172,9 @@
<a href='https://www.epa.gov/pesticide-science-and-assessing-pesticide-risks/standard-operating-procedure-using-nafta-guidance'>https://www.epa.gov/pesticide-science-and-assessing-pesticide-risks/standard-operating-procedure-using-nafta-guidance</a></p>
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
- <pre class="examples"><div class='input'> <span class='no'>nafta_evaluation</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='nafta.html'>nafta</a></span>(<span class='no'>NAFTA_SOP_Appendix_D</span>, <span class='kw'>cores</span> <span class='kw'>=</span> <span class='fl'>1</span>)</div><div class='output co'>#&gt; <span class='message'>The SFO model is rejected as S_SFO is equal or higher than the critical value S_c</span></div><div class='output co'>#&gt; <span class='message'>The representative half-life of the IORE model is longer than the one corresponding</span></div><div class='output co'>#&gt; <span class='message'>to the terminal degradation rate found with the DFOP model.</span></div><div class='output co'>#&gt; <span class='message'>The representative half-life obtained from the DFOP model may be used</span></div><div class='input'> <span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span>(<span class='no'>nafta_evaluation</span>)</div><div class='output co'>#&gt; Sums of squares:
+ <pre class="examples"><div class='input'> <span class='va'>nafta_evaluation</span> <span class='op'>&lt;-</span> <span class='fu'><a href='nafta.html'>nafta</a></span><span class='op'>(</span><span class='va'>NAFTA_SOP_Appendix_D</span>, cores <span class='op'>=</span> <span class='fl'>1</span><span class='op'>)</span>
+</div><div class='output co'>#&gt; <span class='message'>The SFO model is rejected as S_SFO is equal or higher than the critical value S_c</span></div><div class='output co'>#&gt; <span class='message'>The representative half-life of the IORE model is longer than the one corresponding</span></div><div class='output co'>#&gt; <span class='message'>to the terminal degradation rate found with the DFOP model.</span></div><div class='output co'>#&gt; <span class='message'>The representative half-life obtained from the DFOP model may be used</span></div><div class='input'> <span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span><span class='op'>(</span><span class='va'>nafta_evaluation</span><span class='op'>)</span>
+</div><div class='output co'>#&gt; Sums of squares:
#&gt; SFO IORE DFOP
#&gt; 1378.6832 615.7730 517.8836
#&gt;
@@ -178,17 +183,17 @@
#&gt;
#&gt; Parameters:
#&gt; $SFO
-#&gt; Estimate Pr(&gt;t) Lower Upper
-#&gt; parent_0 83.7558 1.80e-14 77.18268 90.3288
-#&gt; k_parent_sink 0.0017 7.43e-05 0.00112 0.0026
-#&gt; sigma 8.7518 1.22e-05 5.64278 11.8608
+#&gt; Estimate Pr(&gt;t) Lower Upper
+#&gt; parent_0 83.7558 1.80e-14 77.18268 90.3288
+#&gt; k_parent 0.0017 7.43e-05 0.00112 0.0026
+#&gt; sigma 8.7518 1.22e-05 5.64278 11.8608
#&gt;
#&gt; $IORE
-#&gt; Estimate Pr(&gt;t) Lower Upper
-#&gt; parent_0 9.69e+01 NA 8.88e+01 1.05e+02
-#&gt; k__iore_parent_sink 8.40e-14 NA 1.79e-18 3.94e-09
-#&gt; N_parent 6.68e+00 NA 4.19e+00 9.17e+00
-#&gt; sigma 5.85e+00 NA 3.76e+00 7.94e+00
+#&gt; Estimate Pr(&gt;t) Lower Upper
+#&gt; parent_0 9.69e+01 NA 8.88e+01 1.05e+02
+#&gt; k__iore_parent 8.40e-14 NA 1.79e-18 3.94e-09
+#&gt; N_parent 6.68e+00 NA 4.19e+00 9.17e+00
+#&gt; sigma 5.85e+00 NA 3.76e+00 7.94e+00
#&gt;
#&gt; $DFOP
#&gt; Estimate Pr(&gt;t) Lower Upper
@@ -206,7 +211,8 @@
#&gt; DFOP 429 2380 841
#&gt;
#&gt; Representative half-life:
-#&gt; [1] 841.41</div><div class='input'> <span class='fu'><a href='https://rdrr.io/r/base/plot.html'>plot</a></span>(<span class='no'>nafta_evaluation</span>)</div><div class='img'><img src='NAFTA_SOP_2015-1.png' alt='' width='700' height='433' /></div></pre>
+#&gt; [1] 841.41</div><div class='input'> <span class='fu'><a href='https://rdrr.io/r/graphics/plot.default.html'>plot</a></span><span class='op'>(</span><span class='va'>nafta_evaluation</span><span class='op'>)</span>
+</div><div class='img'><img src='NAFTA_SOP_2015-1.png' alt='' width='700' height='433' /></div></pre>
</div>
<div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
<nav id="toc" data-toggle="toc" class="sticky-top">
@@ -222,7 +228,7 @@
</div>
<div class="pkgdown">
- <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.5.1.</p>
+ <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.6.1.</p>
</div>
</footer>

Contact - Imprint