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-rw-r--r--docs/reference/confint.mkinfit.html48
1 files changed, 24 insertions, 24 deletions
diff --git a/docs/reference/confint.mkinfit.html b/docs/reference/confint.mkinfit.html
index 806e94ca..5469f8f8 100644
--- a/docs/reference/confint.mkinfit.html
+++ b/docs/reference/confint.mkinfit.html
@@ -206,7 +206,7 @@ Profile-Likelihood Based Confidence Intervals, Applied Statistics, 37,
<span class="r-in"><span class="va">f_d_1</span> <span class="op">&lt;-</span> <span class="fu"><a href="mkinfit.html">mkinfit</a></span><span class="op">(</span><span class="va">SFO_SFO</span>, <span class="fu"><a href="https://rdrr.io/r/base/subset.html" class="external-link">subset</a></span><span class="op">(</span><span class="va">FOCUS_2006_D</span>, <span class="va">value</span> <span class="op">!=</span> <span class="fl">0</span><span class="op">)</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span>
<span class="r-in"><span class="fu"><a href="https://rdrr.io/r/base/system.time.html" class="external-link">system.time</a></span><span class="op">(</span><span class="va">ci_profile</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/stats/confint.html" class="external-link">confint</a></span><span class="op">(</span><span class="va">f_d_1</span>, method <span class="op">=</span> <span class="st">"profile"</span>, cores <span class="op">=</span> <span class="fl">1</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span><span class="op">)</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> user system elapsed </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> 4.361 0.964 3.998 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 3.409 0.000 3.411 </span>
<span class="r-in"><span class="co"># Using more cores does not save much time here, as parent_0 takes up most of the time</span></span>
<span class="r-in"><span class="co"># If we additionally exclude parent_0 (the confidence of which is often of</span></span>
<span class="r-in"><span class="co"># minor interest), we get a nice performance improvement if we use at least 4 cores</span></span>
@@ -214,7 +214,7 @@ Profile-Likelihood Based Confidence Intervals, Applied Statistics, 37,
<span class="r-in"> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"k_parent_sink"</span>, <span class="st">"k_parent_m1"</span>, <span class="st">"k_m1_sink"</span>, <span class="st">"sigma"</span><span class="op">)</span>, cores <span class="op">=</span> <span class="va">n_cores</span><span class="op">)</span><span class="op">)</span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Profiling the likelihood</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> user system elapsed </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> 1.473 0.118 0.917 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 1.317 0.152 0.847 </span>
<span class="r-in"><span class="va">ci_profile</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2.5% 97.5%</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 96.456003640 1.027703e+02</span>
@@ -281,7 +281,7 @@ Profile-Likelihood Based Confidence Intervals, Applied Statistics, 37,
<span class="r-in"><span class="va">ci_quadratic_transformed_ff</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/stats/confint.html" class="external-link">confint</a></span><span class="op">(</span><span class="va">f_d_2</span>, method <span class="op">=</span> <span class="st">"quadratic"</span><span class="op">)</span></span>
<span class="r-in"><span class="va">ci_quadratic_transformed_ff</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2.5% 97.5%</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 96.403833578 102.79311649</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 96.403833565 102.79311648</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> k_parent 0.090823771 0.10725430</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> k_m1 0.004012219 0.00689755</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> f_parent_to_m1 0.469118824 0.55959615</span>
@@ -289,7 +289,7 @@ Profile-Likelihood Based Confidence Intervals, Applied Statistics, 37,
<span class="r-in"><span class="va">ci_quadratic_untransformed_ff</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/stats/confint.html" class="external-link">confint</a></span><span class="op">(</span><span class="va">f_d_2</span>, method <span class="op">=</span> <span class="st">"quadratic"</span>, transformed <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></span>
<span class="r-in"><span class="va">ci_quadratic_untransformed_ff</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2.5% 97.5%</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 96.403833583 1.027931e+02</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 96.403833570 1.027931e+02</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> k_parent 0.090491913 1.069035e-01</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> k_m1 0.003835485 6.685823e-03</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> f_parent_to_m1 0.469113477 5.598387e-01</span>
@@ -309,17 +309,17 @@ Profile-Likelihood Based Confidence Intervals, Applied Statistics, 37,
<span class="r-out co"><span class="r-pr">#&gt;</span> sigma TRUE FALSE</span>
<span class="r-in"><span class="va">rel_diffs_transformed_ff</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2.5% 97.5%</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 0.0005408690 0.0002217233</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> k_parent 0.0009598532 0.0009001864</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> k_m1 0.0307283041 0.0290588361</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> f_parent_to_m1 0.0046881769 0.0027780063</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 0.0005408691 0.0002217232</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> k_parent 0.0009598534 0.0009001862</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> k_m1 0.0307283050 0.0290588375</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> f_parent_to_m1 0.0046881765 0.0027780058</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> sigma 0.0550252516 0.0327066836</span>
<span class="r-in"><span class="va">rel_diffs_untransformed_ff</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2.5% 97.5%</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 0.0005408689 0.0002217232</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> k_parent 0.0046102156 0.0023732281</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> k_m1 0.0146740690 0.0025291820</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> f_parent_to_m1 0.0046995211 0.0023457712</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 0.0005408691 0.0002217231</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> k_parent 0.0046102157 0.0023732283</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> k_m1 0.0146740682 0.0025291807</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> f_parent_to_m1 0.0046995207 0.0023457708</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> sigma 0.0550252516 0.0327066836</span>
<span class="r-in"></span>
<span class="r-in"><span class="co"># The profiling for the following fit does not finish in a reasonable time,</span></span>
@@ -333,19 +333,19 @@ Profile-Likelihood Based Confidence Intervals, Applied Statistics, 37,
<span class="r-in"> error_model_algorithm <span class="op">=</span> <span class="st">"direct"</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span>
<span class="r-in"><span class="fu"><a href="https://rdrr.io/r/stats/confint.html" class="external-link">confint</a></span><span class="op">(</span><span class="va">f_tc_2</span>, method <span class="op">=</span> <span class="st">"quadratic"</span><span class="op">)</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2.5% 97.5%</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 94.596039609 106.19954892</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> k_M1 0.037605368 0.04490762</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> k_M2 0.008568731 0.01087676</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> f_parent_to_M1 0.021462489 0.62023882</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> f_parent_to_M2 0.015165617 0.37975348</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> k1 0.273897348 0.33388101</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> k2 0.018614554 0.02250378</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> g 0.671943411 0.73583305</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> sigma_low 0.251283495 0.83992077</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> rsd_high 0.040411024 0.07662008</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 94.596210088 106.19935874</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> k_M1 0.037605436 0.04490756</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> k_M2 0.008568746 0.01087674</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> f_parent_to_M1 0.021466645 0.62023879</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> f_parent_to_M2 0.015168549 0.37975352</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> k1 0.273897574 0.33388069</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> k2 0.018614555 0.02250379</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> g 0.671943815 0.73583258</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> sigma_low 0.251283808 0.83992121</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> rsd_high 0.040411010 0.07662004</span>
<span class="r-in"><span class="fu"><a href="https://rdrr.io/r/stats/confint.html" class="external-link">confint</a></span><span class="op">(</span><span class="va">f_tc_2</span>, <span class="st">"parent_0"</span>, method <span class="op">=</span> <span class="st">"quadratic"</span><span class="op">)</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2.5% 97.5%</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 94.59604 106.1995</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 94.59621 106.1994</span>
<span class="r-in"><span class="co"># }</span></span>
</code></pre></div>
</div>
@@ -361,7 +361,7 @@ Profile-Likelihood Based Confidence Intervals, Applied Statistics, 37,
</div>
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- <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.2.</p>
+ <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.3.</p>
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