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-rw-r--r--docs/reference/endpoints.html41
1 files changed, 27 insertions, 14 deletions
diff --git a/docs/reference/endpoints.html b/docs/reference/endpoints.html
index d9c43f84..376a263e 100644
--- a/docs/reference/endpoints.html
+++ b/docs/reference/endpoints.html
@@ -78,7 +78,7 @@ advantage that the SFORB model can also be used for metabolites." />
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.50.2</span>
+ <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.50.3</span>
</span>
</div>
@@ -115,6 +115,9 @@ advantage that the SFORB model can also be used for metabolites." />
<li>
<a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
</li>
+ <li>
+ <a href="../articles/web_only/benchmarks.html">Some benchmark timings</a>
+ </li>
</ul>
</li>
<li>
@@ -123,7 +126,7 @@ advantage that the SFORB model can also be used for metabolites." />
</ul>
<ul class="nav navbar-nav navbar-right">
<li>
- <a href="http://github.com/jranke/mkin/">
+ <a href="https://github.com/jranke/mkin/">
<span class="fab fa fab fa-github fa-lg"></span>
</a>
@@ -143,7 +146,7 @@ advantage that the SFORB model can also be used for metabolites." />
<div class="page-header">
<h1>Function to calculate endpoints for further use from kinetic models fitted
with mkinfit</h1>
- <small class="dont-index">Source: <a href='http://github.com/jranke/mkin/blob/master/R/endpoints.R'><code>R/endpoints.R</code></a></small>
+ <small class="dont-index">Source: <a href='https://github.com/jranke/mkin/blob/master/R/endpoints.R'><code>R/endpoints.R</code></a></small>
<div class="hidden name"><code>endpoints.Rd</code></div>
</div>
@@ -155,7 +158,7 @@ are equivalent to the rate constants of the DFOP model, but with the
advantage that the SFORB model can also be used for metabolites.</p>
</div>
- <pre class="usage"><span class='fu'>endpoints</span>(<span class='no'>fit</span>)</pre>
+ <pre class="usage"><span class='fu'>endpoints</span><span class='op'>(</span><span class='va'>fit</span><span class='op'>)</span></pre>
<h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
<table class="ref-arguments">
@@ -176,27 +179,37 @@ of these SFORB models, equivalent to DFOP rate constants</p>
<h2 class="hasAnchor" id="note"><a class="anchor" href="#note"></a>Note</h2>
<p>The function is used internally by <code><a href='summary.mkinfit.html'>summary.mkinfit</a></code>.</p>
+ <h2 class="hasAnchor" id="author"><a class="anchor" href="#author"></a>Author</h2>
+
+ <p>Johannes Ranke</p>
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
<pre class="examples"><div class='input'>
- <span class='no'>fit</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='st'>"FOMC"</span>, <span class='no'>FOCUS_2006_C</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
- <span class='fu'>endpoints</span>(<span class='no'>fit</span>)</div><div class='output co'>#&gt; $distimes
+ <span class='va'>fit</span> <span class='op'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span><span class='op'>(</span><span class='st'>"FOMC"</span>, <span class='va'>FOCUS_2006_C</span>, quiet <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
+ <span class='fu'>endpoints</span><span class='op'>(</span><span class='va'>fit</span><span class='op'>)</span>
+</div><div class='output co'>#&gt; $distimes
#&gt; DT50 DT90 DT50back
#&gt; parent 1.785233 15.1479 4.559973
#&gt; </div><div class='input'> <span class='co'># \dontrun{</span>
- <span class='no'>fit_2</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='st'>"SFORB"</span>, <span class='no'>FOCUS_2006_C</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
- <span class='fu'>endpoints</span>(<span class='no'>fit_2</span>)</div><div class='output co'>#&gt; $ff
-#&gt; parent_free_sink
-#&gt; 1
+ <span class='va'>fit_2</span> <span class='op'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span><span class='op'>(</span><span class='st'>"DFOP"</span>, <span class='va'>FOCUS_2006_C</span>, quiet <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
+ <span class='fu'>endpoints</span><span class='op'>(</span><span class='va'>fit_2</span><span class='op'>)</span>
+</div><div class='output co'>#&gt; $distimes
+#&gt; DT50 DT90 DT50back DT50_k1 DT50_k2
+#&gt; parent 1.886925 21.25106 6.397207 1.508293 38.83438
+#&gt; </div><div class='input'> <span class='va'>fit_3</span> <span class='op'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span><span class='op'>(</span><span class='st'>"SFORB"</span>, <span class='va'>FOCUS_2006_C</span>, quiet <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
+ <span class='fu'>endpoints</span><span class='op'>(</span><span class='va'>fit_3</span><span class='op'>)</span>
+</div><div class='output co'>#&gt; $ff
+#&gt; parent_free
+#&gt; 1
#&gt;
#&gt; $SFORB
#&gt; parent_b1 parent_b2
#&gt; 0.4595574 0.0178488
#&gt;
#&gt; $distimes
-#&gt; DT50 DT90 DT50_parent_b1 DT50_parent_b2
-#&gt; parent 1.886925 21.25106 1.508293 38.83438
-#&gt; </div><div class='input'> # }
+#&gt; DT50 DT90 DT50back DT50_parent_b1 DT50_parent_b2
+#&gt; parent 1.886925 21.25106 6.397208 1.508293 38.83438
+#&gt; </div><div class='input'> <span class='co'># }</span>
</div></pre>
</div>
@@ -214,7 +227,7 @@ of these SFORB models, equivalent to DFOP rate constants</p>
</div>
<div class="pkgdown">
- <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.5.1.</p>
+ <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.6.1.</p>
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