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diff --git a/docs/reference/index.html b/docs/reference/index.html new file mode 100644 index 00000000..6fcf39c8 --- /dev/null +++ b/docs/reference/index.html @@ -0,0 +1,286 @@ +<!-- Generated by pkgdown: do not edit by hand --> +<!DOCTYPE html> +<html> + <head> + <meta charset="utf-8"> +<meta http-equiv="X-UA-Compatible" content="IE=edge"> +<meta name="viewport" content="width=device-width, initial-scale=1.0"> + +<title>Function reference • mkin</title> + +<!-- jquery --> +<script src="https://code.jquery.com/jquery-3.1.0.min.js" integrity="sha384-nrOSfDHtoPMzJHjVTdCopGqIqeYETSXhZDFyniQ8ZHcVy08QesyHcnOUpMpqnmWq" crossorigin="anonymous"></script> +<!-- Bootstrap --> + +<link href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-BVYiiSIFeK1dGmJRAkycuHAHRg32OmUcww7on3RYdg4Va+PmSTsz/K68vbdEjh4u" crossorigin="anonymous"> +<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js" 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<div class="container"> + <div class="navbar-header"> + <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar"> + <span class="icon-bar"></span> + <span class="icon-bar"></span> + <span class="icon-bar"></span> + </button> + <a class="navbar-brand" href="../index.html">mkin</a> + </div> + <div id="navbar" class="navbar-collapse collapse"> + <ul class="nav navbar-nav"> + <li> + <a href="../reference/index.html">Reference</a> +</li> +<li> + <a href="../articles/index.html">Articles</a> +</li> +<li> + <a href="../news/index.html">News</a> +</li> + </ul> + + <ul class="nav navbar-nav navbar-right"> + + </ul> + </div><!--/.nav-collapse --> + </div><!--/.container --> +</div><!--/.navbar --> + + + </header> + + <div class="row"> + <div class="col-md-9"> + <div class="page-header"> + <h1>Function reference</h1> + <h4>version 0.9.44.9000</h4> + </div> + + <div class="contents"> + <h2 id="section-main-functions" class="hasAnchor"><a href="#section-main-functions" class="anchor"></a>Main functions</h2> + <p class="section-desc"><p>Essential functionality</p></p> + + <p><a href="mkinfit.html"> +</a></p> + <ul> + <li><code><a href="mkinfit.html">mkinfit</a></code></li> + </ul> + <p><a href="mkinmod.html"> +</a></p> + <ul> + <li><code><a href="mkinmod.html">mkinmod</a></code></li> + </ul> + <p><a href="mmkin.html"> +</a></p> + <ul> + <li><code><a href="mmkin.html">mmkin</a></code></li> + </ul> + <h2 id="section-show-results" class="hasAnchor"><a href="#section-show-results" class="anchor"></a>Show results</h2> + <p class="section-desc"><p>Functions working with mkinfit objects</p></p> + + <p><a href="endpoints.html"> +</a></p> + <ul> + <li><code><a href="endpoints.html">endpoints</a></code></li> + </ul> + <p><a href="mkinerrmin.html"> +</a></p> + <ul> + <li><code><a href="mkinerrmin.html">mkinerrmin</a></code></li> + </ul> + <p><a href="mkinparplot.html"> +</a></p> + <ul> + <li><code><a href="mkinparplot.html">mkinparplot</a></code></li> + </ul> + <p><a href="mkinresplot.html"> +</a></p> + <ul> + <li><code><a href="mkinresplot.html">mkinresplot</a></code></li> + </ul> + <p><a href="plot.mkinfit.html"> +</a></p> + <ul> + <li><code><a href="plot.mkinfit.html">plot.mkinfit</a></code></li><li><code><a href="plot.mkinfit.html">plot_sep</a></code></li> + </ul> + <p><a href="summary.mkinfit.html"> +</a></p> + <ul> + <li><code><a href="summary.mkinfit.html">summary.mkinfit</a></code></li><li><code><a href="summary.mkinfit.html">print.summary.mkinfit</a></code></li> + </ul> + <h2 id="section-work-with-mmkin-objects" class="hasAnchor"><a href="#section-work-with-mmkin-objects" class="anchor"></a>Work with mmkin objects</h2> + <p class="section-desc"><p>Functions working with aggregated results</p></p> + + <p><a href="Extract.mmkin.html">Subsetting method for mmkin objects</a></p> + <ul> + <li><code><a href="Extract.mmkin.html">[.mmkin</a></code></li> + </ul> + <p><a href="plot.mmkin.html"> +</a></p> + <ul> + <li><code><a href="plot.mmkin.html">plot.mmkin</a></code></li> + </ul> + <h2 id="section-datasets-and-known-results" class="hasAnchor"><a href="#section-datasets-and-known-results" class="anchor"></a>Datasets and known results</h2> + <p class="section-desc"></p> + + <p><a href="FOCUS_2006_DFOP_ref_A_to_B.html"> +</a></p> + <ul> + <li><code><a href="FOCUS_2006_DFOP_ref_A_to_B.html">FOCUS_2006_DFOP_ref_A_to_B</a></code></li> + </ul> + <p><a href="FOCUS_2006_FOMC_ref_A_to_F.html"> +</a></p> + <ul> + <li><code><a href="FOCUS_2006_FOMC_ref_A_to_F.html">FOCUS_2006_FOMC_ref_A_to_F</a></code></li> + </ul> + <p><a href="FOCUS_2006_HS_ref_A_to_F.html"> +</a></p> + <ul> + <li><code><a href="FOCUS_2006_HS_ref_A_to_F.html">FOCUS_2006_HS_ref_A_to_F</a></code></li> + </ul> + <p><a href="FOCUS_2006_SFO_ref_A_to_F.html"> +</a></p> + <ul> + <li><code><a href="FOCUS_2006_SFO_ref_A_to_F.html">FOCUS_2006_SFO_ref_A_to_F</a></code></li> + </ul> + <p><a href="mccall81_245T.html"> +</a></p> + <ul> + <li><code><a href="mccall81_245T.html">mccall81_245T</a></code></li> + </ul> + <p><a href="schaefer07_complex_case.html"> +</a></p> + <ul> + <li><code><a href="schaefer07_complex_case.html">schaefer07_complex_case</a></code></li><li><code><a href="schaefer07_complex_case.html">schaefer07_complex_results</a></code></li> + </ul> + <p><a href="synthetic_data_for_UBA.html"> +</a></p> + <ul> + <li><code><a href="synthetic_data_for_UBA.html">synthetic_data_for_UBA_2014</a></code></li> + </ul> + <h2 id="section-helper-functions" class="hasAnchor"><a href="#section-helper-functions" class="anchor"></a>Helper functions</h2> + <p class="section-desc"></p> + + <p><a href="geometric_mean.html"> Calculate the geometric mean </a></p> + <ul> + <li><code><a href="geometric_mean.html">geometric_mean</a></code></li> + </ul> + <p><a href="ilr.html"> +</a></p> + <ul> + <li><code><a href="ilr.html">ilr</a></code></li><li><code><a href="ilr.html">invilr</a></code></li> + </ul> + <p><a href="mkin_long_to_wide.html"> +</a></p> + <ul> + <li><code><a href="mkin_long_to_wide.html">mkin_long_to_wide</a></code></li> + </ul> + <p><a href="mkinpredict.html"> +</a></p> + <ul> + <li><code><a href="mkinpredict.html">mkinpredict</a></code></li> + </ul> + <p><a href="mkinsub.html"> +</a></p> + <ul> + <li><code><a href="mkinsub.html">mkinsub</a></code></li> + </ul> + <p><a href="mkin_wide_to_long.html"> +</a></p> + <ul> + <li><code><a href="mkin_wide_to_long.html">mkin_wide_to_long</a></code></li> + </ul> + <p><a href="print.mkinmod.html"> +</a></p> + <ul> + <li><code><a href="print.mkinmod.html">print.mkinmod</a></code></li> + </ul> + <p><a href="transform_odeparms.html"> +</a></p> + <ul> + <li><code><a href="transform_odeparms.html">transform_odeparms</a></code></li><li><code><a href="transform_odeparms.html">backtransform_odeparms</a></code></li> + </ul> + <h2 id="section-analytical-solutions" class="hasAnchor"><a href="#section-analytical-solutions" class="anchor"></a>Analytical solutions</h2> + <p class="section-desc"><p>Parent only model solutions</p></p> + + <p><a href="DFOP.solution.html"> +</a></p> + <ul> + <li><code><a href="DFOP.solution.html">DFOP.solution</a></code></li> + </ul> + <p><a href="FOMC.solution.html"> First-Order Multi-Compartment kinetics </a></p> + <ul> + <li><code><a href="FOMC.solution.html">FOMC.solution</a></code></li> + </ul> + <p><a href="HS.solution.html"> Hockey-Stick kinetics </a></p> + <ul> + <li><code><a href="HS.solution.html">HS.solution</a></code></li> + </ul> + <p><a href="IORE.solution.html"> Indeterminate order rate equation kinetics </a></p> + <ul> + <li><code><a href="IORE.solution.html">IORE.solution</a></code></li> + </ul> + <p><a href="SFORB.solution.html"> Single First-Order Reversible Binding kinetics </a></p> + <ul> + <li><code><a href="SFORB.solution.html">SFORB.solution</a></code></li> + </ul> + <h2 id="section-deprecated-functions" class="hasAnchor"><a href="#section-deprecated-functions" class="anchor"></a>Deprecated functions</h2> + <p class="section-desc"><p>Functions that have been superseeded</p></p> + + <p><a href="mkinplot.html"> +</a></p> + <ul> + <li><code><a href="mkinplot.html">mkinplot</a></code></li> + </ul> + + </div> + </div> + + <div class="col-md-3 hidden-xs hidden-sm" id="sidebar"> + <h2>Contents</h2> + <ul class="nav nav-pills nav-stacked"> + <li><a href="#section-main-functions">Main functions</a></li> + <li><a href="#section-show-results">Show results</a></li> + <li><a href="#section-work-with-mmkin-objects">Work with mmkin objects</a></li> + <li><a href="#section-datasets-and-known-results">Datasets and known results</a></li> + <li><a href="#section-helper-functions">Helper functions</a></li> + <li><a href="#section-analytical-solutions">Analytical solutions</a></li> + <li><a href="#section-deprecated-functions">Deprecated functions</a></li> + </ul> + </div> +</div> + + <footer> + <div class="copyright"> + <p>Developed by Johannes Ranke, Eurofins Regulatory AG.</p> +</div> + +<div class="pkgdown"> + <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p> +</div> + + </footer> + </div> + + </body> +</html> |