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-rw-r--r--docs/reference/mccall81_245T.html42
1 files changed, 21 insertions, 21 deletions
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+++ b/docs/reference/mccall81_245T.html
@@ -160,14 +160,14 @@
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
<pre class="examples"><div class='input'> <span class='no'>SFO_SFO_SFO</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span>(<span class='kw'>T245</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/list'>list</a></span>(<span class='kw'>type</span> <span class='kw'>=</span> <span class='st'>"SFO"</span>, <span class='kw'>to</span> <span class='kw'>=</span> <span class='st'>"phenol"</span>),
<span class='kw'>phenol</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/list'>list</a></span>(<span class='kw'>type</span> <span class='kw'>=</span> <span class='st'>"SFO"</span>, <span class='kw'>to</span> <span class='kw'>=</span> <span class='st'>"anisole"</span>),
- <span class='kw'>anisole</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/list'>list</a></span>(<span class='kw'>type</span> <span class='kw'>=</span> <span class='st'>"SFO"</span>))</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'> </div><div class='input'> <span class='no'>fit.1</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO_SFO</span>, <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/subset'>subset</a></span>(<span class='no'>mccall81_245T</span>, <span class='no'>soil</span> <span class='kw'>==</span> <span class='st'>"Commerce"</span>), <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#&gt; <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='no'>fit.1</span>)$<span class='no'>bpar</span></div><div class='output co'>#&gt; <span class='warning'>Warning: NaNs wurden erzeugt</span></div><div class='output co'>#&gt; Estimate se_notrans t value Pr(&gt;t) Lower
-#&gt; T245_0 1.038550e+02 2.150809526 48.286486 3.542195e-18 99.246062243
-#&gt; k_T245_sink 1.636106e-02 NaN NaN NaN 0.012661558
-#&gt; k_T245_phenol 2.700936e-02 NaN NaN NaN 0.024487315
-#&gt; k_phenol_sink 1.187912e-10 NaN NaN NaN 0.000000000
-#&gt; k_phenol_anisole 4.050581e-01 0.105378416 3.843843 7.969195e-04 0.218013983
-#&gt; k_anisole_sink 6.678742e-03 0.000620576 10.762166 9.426361e-09 0.005370739
-#&gt; sigma 2.514628e+00 0.338361458 7.431780 1.053891e-06 1.706607296
+ <span class='kw'>anisole</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/list'>list</a></span>(<span class='kw'>type</span> <span class='kw'>=</span> <span class='st'>"SFO"</span>))</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'> </div><div class='input'> <span class='no'>fit.1</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO_SFO</span>, <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/subset'>subset</a></span>(<span class='no'>mccall81_245T</span>, <span class='no'>soil</span> <span class='kw'>==</span> <span class='st'>"Commerce"</span>), <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#&gt; <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='no'>fit.1</span>)$<span class='no'>bpar</span></div><div class='output co'>#&gt; <span class='warning'>Warning: NaNs wurden erzeugt</span></div><div class='output co'>#&gt; Estimate se_notrans t value Pr(&gt;t) Lower
+#&gt; T245_0 1.038550e+02 2.1508110557 48.286452 3.542232e-18 99.246062215
+#&gt; k_T245_sink 1.636106e-02 NaN NaN NaN 0.012661558
+#&gt; k_T245_phenol 2.700936e-02 NaN NaN NaN 0.024487315
+#&gt; k_phenol_sink 1.788604e-10 NaN NaN NaN 0.000000000
+#&gt; k_phenol_anisole 4.050581e-01 0.1053801116 3.843781 7.970202e-04 0.218013982
+#&gt; k_anisole_sink 6.678742e-03 0.0006205844 10.762020 9.428076e-09 0.005370739
+#&gt; sigma 2.514628e+00 0.3383670685 7.431657 1.054101e-06 1.706607296
#&gt; Upper
#&gt; T245_0 1.084640e+02
#&gt; k_T245_sink 2.114150e-02
@@ -177,7 +177,7 @@
#&gt; k_anisole_sink 8.305299e-03
#&gt; sigma 3.322649e+00</div><div class='input'> <span class='fu'><a href='endpoints.html'>endpoints</a></span>(<span class='no'>fit.1</span>)</div><div class='output co'>#&gt; $ff
#&gt; T245_sink T245_phenol phenol_sink phenol_anisole anisole_sink
-#&gt; 3.772401e-01 6.227599e-01 2.932696e-10 1.000000e+00 1.000000e+00
+#&gt; 3.772401e-01 6.227599e-01 4.415672e-10 1.000000e+00 1.000000e+00
#&gt;
#&gt; $SFORB
#&gt; logical(0)
@@ -191,21 +191,21 @@
<span class='no'>fit.2</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO_SFO</span>, <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/subset'>subset</a></span>(<span class='no'>mccall81_245T</span>, <span class='no'>soil</span> <span class='kw'>==</span> <span class='st'>"Commerce"</span>),
<span class='kw'>parms.ini</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='kw'>k_phenol_sink</span> <span class='kw'>=</span> <span class='fl'>0</span>),
<span class='kw'>fixed_parms</span> <span class='kw'>=</span> <span class='st'>"k_phenol_sink"</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#&gt; <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='no'>fit.2</span>)$<span class='no'>bpar</span></div><div class='output co'>#&gt; Estimate se_notrans t value Pr(&gt;t) Lower
-#&gt; T245_0 1.038550e+02 2.1623652988 48.028441 4.993105e-19 99.271024566
-#&gt; k_T245_sink 1.636106e-02 0.0019676253 8.315129 1.673677e-07 0.012679144
-#&gt; k_T245_phenol 2.700936e-02 0.0012421965 21.743225 1.314080e-13 0.024500318
-#&gt; k_phenol_anisole 4.050581e-01 0.1177235385 3.440757 1.679236e-03 0.218746681
-#&gt; k_anisole_sink 6.678743e-03 0.0006829745 9.778904 1.872891e-08 0.005377084
+#&gt; T245_0 1.038550e+02 2.1623653063 48.028441 4.993105e-19 99.271025146
+#&gt; k_T245_sink 1.636106e-02 0.0019676255 8.315130 1.673674e-07 0.012679148
+#&gt; k_T245_phenol 2.700936e-02 0.0012421966 21.743224 1.314080e-13 0.024500319
+#&gt; k_phenol_anisole 4.050581e-01 0.1177235488 3.440757 1.679237e-03 0.218746679
+#&gt; k_anisole_sink 6.678742e-03 0.0006829745 9.778904 1.872892e-08 0.005377084
#&gt; sigma 2.514628e+00 0.3790944250 6.633250 2.875782e-06 1.710983655
#&gt; Upper
-#&gt; T245_0 1.084390e+02
-#&gt; k_T245_sink 2.111217e-02
-#&gt; k_T245_phenol 2.977534e-02
-#&gt; k_phenol_anisole 7.500550e-01
-#&gt; k_anisole_sink 8.295501e-03
-#&gt; sigma 3.318272e+00</div><div class='input'> <span class='fu'><a href='endpoints.html'>endpoints</a></span>(<span class='no'>fit.1</span>)</div><div class='output co'>#&gt; $ff
+#&gt; T245_0 108.43904395
+#&gt; k_T245_sink 0.02111217
+#&gt; k_T245_phenol 0.02977535
+#&gt; k_phenol_anisole 0.75005504
+#&gt; k_anisole_sink 0.00829550
+#&gt; sigma 3.31827222</div><div class='input'> <span class='fu'><a href='endpoints.html'>endpoints</a></span>(<span class='no'>fit.1</span>)</div><div class='output co'>#&gt; $ff
#&gt; T245_sink T245_phenol phenol_sink phenol_anisole anisole_sink
-#&gt; 3.772401e-01 6.227599e-01 2.932696e-10 1.000000e+00 1.000000e+00
+#&gt; 3.772401e-01 6.227599e-01 4.415672e-10 1.000000e+00 1.000000e+00
#&gt;
#&gt; $SFORB
#&gt; logical(0)

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