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@@ -160,14 +160,14 @@
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
<pre class="examples"><div class='input'> <span class='no'>SFO_SFO_SFO</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span>(<span class='kw'>T245</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/list'>list</a></span>(<span class='kw'>type</span> <span class='kw'>=</span> <span class='st'>"SFO"</span>, <span class='kw'>to</span> <span class='kw'>=</span> <span class='st'>"phenol"</span>),
<span class='kw'>phenol</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/list'>list</a></span>(<span class='kw'>type</span> <span class='kw'>=</span> <span class='st'>"SFO"</span>, <span class='kw'>to</span> <span class='kw'>=</span> <span class='st'>"anisole"</span>),
- <span class='kw'>anisole</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/list'>list</a></span>(<span class='kw'>type</span> <span class='kw'>=</span> <span class='st'>"SFO"</span>))</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'> </div><div class='input'> <span class='no'>fit.1</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO_SFO</span>, <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/subset'>subset</a></span>(<span class='no'>mccall81_245T</span>, <span class='no'>soil</span> <span class='kw'>==</span> <span class='st'>"Commerce"</span>), <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#&gt; <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='no'>fit.1</span>)$<span class='no'>bpar</span></div><div class='output co'>#&gt; <span class='warning'>Warning: NaNs wurden erzeugt</span></div><div class='output co'>#&gt; Estimate se_notrans t value Pr(&gt;t) Lower
-#&gt; T245_0 1.038550e+02 2.1508106806 48.286460 3.542223e-18 99.246062186
-#&gt; k_T245_sink 1.636106e-02 NaN NaN NaN 0.012661557
-#&gt; k_T245_phenol 2.700936e-02 NaN NaN NaN 0.024487315
-#&gt; k_phenol_sink 1.054519e-10 NaN NaN NaN 0.000000000
-#&gt; k_phenol_anisole 4.050581e-01 0.1053797258 3.843795 7.969973e-04 0.218013983
-#&gt; k_anisole_sink 6.678742e-03 0.0006205825 10.762053 9.427693e-09 0.005370739
-#&gt; sigma 2.514628e+00 0.3383657682 7.431685 1.054052e-06 1.706607296
+ <span class='kw'>anisole</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/list'>list</a></span>(<span class='kw'>type</span> <span class='kw'>=</span> <span class='st'>"SFO"</span>))</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'> </div><div class='input'> <span class='no'>fit.1</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO_SFO</span>, <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/subset'>subset</a></span>(<span class='no'>mccall81_245T</span>, <span class='no'>soil</span> <span class='kw'>==</span> <span class='st'>"Commerce"</span>), <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#&gt; <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='no'>fit.1</span>)$<span class='no'>bpar</span></div><div class='output co'>#&gt; <span class='warning'>Warning: NaNs wurden erzeugt</span></div><div class='output co'>#&gt; Estimate se_notrans t value Pr(&gt;t) Lower
+#&gt; T245_0 1.038550e+02 2.150809526 48.286486 3.542195e-18 99.246062243
+#&gt; k_T245_sink 1.636106e-02 NaN NaN NaN 0.012661558
+#&gt; k_T245_phenol 2.700936e-02 NaN NaN NaN 0.024487315
+#&gt; k_phenol_sink 1.187912e-10 NaN NaN NaN 0.000000000
+#&gt; k_phenol_anisole 4.050581e-01 0.105378416 3.843843 7.969195e-04 0.218013983
+#&gt; k_anisole_sink 6.678742e-03 0.000620576 10.762166 9.426361e-09 0.005370739
+#&gt; sigma 2.514628e+00 0.338361458 7.431780 1.053891e-06 1.706607296
#&gt; Upper
#&gt; T245_0 1.084640e+02
#&gt; k_T245_sink 2.114150e-02
@@ -177,7 +177,7 @@
#&gt; k_anisole_sink 8.305299e-03
#&gt; sigma 3.322649e+00</div><div class='input'> <span class='fu'><a href='endpoints.html'>endpoints</a></span>(<span class='no'>fit.1</span>)</div><div class='output co'>#&gt; $ff
#&gt; T245_sink T245_phenol phenol_sink phenol_anisole anisole_sink
-#&gt; 3.772401e-01 6.227599e-01 2.603376e-10 1.000000e+00 1.000000e+00
+#&gt; 3.772401e-01 6.227599e-01 2.932696e-10 1.000000e+00 1.000000e+00
#&gt;
#&gt; $SFORB
#&gt; logical(0)
@@ -205,7 +205,7 @@
#&gt; k_anisole_sink 8.295501e-03
#&gt; sigma 3.318272e+00</div><div class='input'> <span class='fu'><a href='endpoints.html'>endpoints</a></span>(<span class='no'>fit.1</span>)</div><div class='output co'>#&gt; $ff
#&gt; T245_sink T245_phenol phenol_sink phenol_anisole anisole_sink
-#&gt; 3.772401e-01 6.227599e-01 2.603376e-10 1.000000e+00 1.000000e+00
+#&gt; 3.772401e-01 6.227599e-01 2.932696e-10 1.000000e+00 1.000000e+00
#&gt;
#&gt; $SFORB
#&gt; logical(0)

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