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diff --git a/docs/reference/mkinds.html b/docs/reference/mkinds.html index 386c00d7..ef6fb35c 100644 --- a/docs/reference/mkinds.html +++ b/docs/reference/mkinds.html @@ -36,7 +36,10 @@ <meta property="og:title" content="A dataset class for mkin — mkinds" /> -<meta property="og:description" content="A dataset class for mkin" /> +<meta property="og:description" content="At the moment this dataset class is hardly used in mkin. For example, +mkinfit does not take mkinds datasets as argument, but works with dataframes +such as the on contained in the data field of mkinds objects. Some datasets +provided by this package come as mkinds objects nevertheless." /> <meta name="twitter:card" content="summary" /> @@ -69,7 +72,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">mkin</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.49.6</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.49.9</span> </span> </div> @@ -133,47 +136,89 @@ </div> <div class="ref-description"> - <p>A dataset class for mkin</p> + <p>At the moment this dataset class is hardly used in mkin. For example, +mkinfit does not take mkinds datasets as argument, but works with dataframes +such as the on contained in the data field of mkinds objects. Some datasets +provided by this package come as mkinds objects nevertheless.</p> </div> - <pre class="usage"><span class='no'>mkinds</span></pre> - <h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2> + <h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2> - <p>An <code>R6Class</code> generator object.</p> - <h2 class="hasAnchor" id="fields"><a class="anchor" href="#fields"></a>Fields</h2> + <div class='dont-index'><p>The S3 printing method <code><a href='print.mkinds.html'>print.mkinds</a></code></p></div> + <h2 class="hasAnchor" id="public-fields"><a class="anchor" href="#public-fields"></a>Public fields</h2> + + <p><div class="r6-fields"></p><dl class='dl-horizontal'> +<dt><code>title</code></dt><dd><p>A full title for the dataset</p></dd> + +<dt><code>sampling_times</code></dt><dd><p>The sampling times</p></dd> + +<dt><code>time_unit</code></dt><dd><p>The time unit</p></dd> + +<dt><code>observed</code></dt><dd><p>Names of the observed variables</p></dd> + +<dt><code>unit</code></dt><dd><p>The unit of the observations</p></dd> + +<dt><code>replicates</code></dt><dd><p>The maximum number of replicates per sampling time</p></dd> + +<dt><code>data</code></dt><dd><p>A data frame with at least the columns name, time +and value in order to be compatible with mkinfit</p></dd> + +</dl><p></div></p> + <h2 class="hasAnchor" id="methods"><a class="anchor" href="#methods"></a>Methods</h2> +<h3>Public methods</h3> + +<ul> +<li><p><a href='#method-new'><code>mkinds$new()</code></a></p></li> +<li><p><a href='#method-clone'><code>mkinds$clone()</code></a></p></li> +</ul> +<p><hr> +<a id="method-new"></a></p><h3>Method <code>new()</code></h3> +<p>Create a new mkinds object</p><h3>Usage</h3> +<p><div class="r"></p><pre>mkinds$new(title = "", data, time_unit = NA, unit = NA)</pre><p></div></p> +<h3>Arguments</h3> +<p><div class="arguments"></p><dl class='dl-horizontal'> +<dt><code>title</code></dt><dd><p>The dataset title</p></dd> -<dl class='dl-horizontal'> -<dt>list("title")</dt><dd><p>A full title for the dataset</p></dd> +<dt><code>data</code></dt><dd><p>The data</p></dd> -<dt>list("sampling")</dt><dd><p>times The sampling times</p></dd> +<dt><code>time_unit</code></dt><dd><p>The time unit</p></dd> -<dt>list("time_unit")</dt><dd><p>The time unit</p></dd> +<dt><code>unit</code></dt><dd><p>The unit of the observations</p></dd> -<dt>list("observed")</dt><dd><p>Names of the observed compounds</p></dd> +</dl><p></div></p> +<p><hr> +<a id="method-clone"></a></p><h3>Method <code>clone()</code></h3> +<p>The objects of this class are cloneable with this method.</p><h3>Usage</h3> +<p><div class="r"></p><pre>mkinds$clone(deep = FALSE)</pre><p></div></p> -<dt>list("unit")</dt><dd><p>The unit of the observations</p></dd> +<h3>Arguments</h3> +<p><div class="arguments"></p><dl class='dl-horizontal'> +<dt><code>deep</code></dt><dd><p>Whether to make a deep clone.</p></dd> -<dt>list("replicates")</dt><dd><p>The number of replicates</p></dd> +</dl><p></div></p> -<dt>list("data")</dt><dd><p>A dataframe with at least the columns name, time and -value in order to be compatible with mkinfit</p></dd> -</dl> <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2> <pre class="examples"><div class='input'> -<span class='no'>mds</span> <span class='kw'><-</span> <span class='no'>mkinds</span>$<span class='fu'>new</span>(<span class='st'>"FOCUS A"</span>, <span class='no'>FOCUS_2006_A</span>)</div></pre> +<span class='no'>mds</span> <span class='kw'><-</span> <span class='no'>mkinds</span>$<span class='fu'>new</span>(<span class='st'>"FOCUS A"</span>, <span class='no'>FOCUS_2006_A</span>) +<span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span>(<span class='no'>mds</span>)</div><div class='output co'>#> <mkinds> with $title: FOCUS A +#> Observed compounds $observed: parent +#> Sampling times $sampling_times: 0, 3, 7, 14, 30, 62, 90, 118 +#> With a maximum of 1 replicates</div><div class='input'> +</div></pre> </div> <div class="col-md-3 hidden-xs hidden-sm" id="sidebar"> <h2>Contents</h2> <ul class="nav nav-pills nav-stacked"> - <li><a href="#format">Format</a></li> - <li><a href="#fields">Fields</a></li> + <li><a href="#see-also">See also</a></li> + <li><a href="#public-fields">Public fields</a></li> + <li><a href="#methods">Methods</a></li> <li><a href="#examples">Examples</a></li> </ul> |