diff options
Diffstat (limited to 'docs/reference/mkinfit.html')
| -rw-r--r-- | docs/reference/mkinfit.html | 19 |
1 files changed, 10 insertions, 9 deletions
diff --git a/docs/reference/mkinfit.html b/docs/reference/mkinfit.html index 9e59c7e6..e99e7d9e 100644 --- a/docs/reference/mkinfit.html +++ b/docs/reference/mkinfit.html @@ -325,13 +325,13 @@ <tr> <th>weight</th> <td><p>only if <code>err</code>=<code>NULL</code>: how to weight the residuals, one of "none", - "std", "mean", see details of <code>modCost</code>, or "tc" for the - two component error model of Rocke and Lorenzato.</p></td> + "std", "mean", see details of <code>modCost</code>, or "tc" for the + two component error model.</p></td> </tr> <tr> <th>tc</th> - <td><p>The two components of the Rocke and Lorenzato error model as used - for (initial) weighting</p></td> + <td><p>The two components of the error model as used for (initial) + weighting</p></td> </tr> <tr> <th>scaleVar</th> @@ -367,7 +367,8 @@ <code>reweight.tol</code> or up to the maximum number of iterations specified by <code>reweight.max.iter</code>. The second reweighting method is called "tc" (two-component error model). - When using this method, the two components an error model similar to + When using this method, the two components of an error model similar to + the one described by Rocke and Lorenzato (1995) are estimated from the fit and the resulting variances are used for weighting the residuals in each iteration until convergence of these components or up to the maximum number of iterations @@ -432,15 +433,15 @@ <span class='no'>fit</span> <span class='kw'><-</span> <span class='fu'>mkinfit</span>(<span class='st'>"FOMC"</span>, <span class='no'>FOCUS_2006_C</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>) <span class='fu'>summary</span>(<span class='no'>fit</span>)</div><div class='output co'>#> mkin version used for fitting: 0.9.47.2 #> R version used for fitting: 3.5.1 -#> Date of fit: Wed Jul 18 15:16:04 2018 -#> Date of summary: Wed Jul 18 15:16:04 2018 +#> Date of fit: Thu Sep 6 11:51:08 2018 +#> Date of summary: Thu Sep 6 11:51:08 2018 #> #> Equations: #> d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent #> #> Model predictions using solution type analytical #> -#> Fitted with method Port using 64 model solutions performed in 0.134 s +#> Fitted with method Port using 64 model solutions performed in 0.142 s #> #> Weighting: none #> @@ -509,7 +510,7 @@ <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>))</div><div class='output co'>#> <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'><span class='co'># Fit the model to the FOCUS example dataset D using defaults</span> <span class='fu'>print</span>(<span class='fu'>system.time</span>(<span class='no'>fit</span> <span class='kw'><-</span> <span class='fu'>mkinfit</span>(<span class='no'>SFO_SFO</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>solution_type</span> <span class='kw'>=</span> <span class='st'>"eigen"</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)))</div><div class='output co'>#> User System verstrichen -#> 0.863 0.000 0.864 </div><div class='input'><span class='fu'>coef</span>(<span class='no'>fit</span>)</div><div class='output co'>#> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink +#> 0.895 0.000 0.898 </div><div class='input'><span class='fu'>coef</span>(<span class='no'>fit</span>)</div><div class='output co'>#> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink #> 99.59848 -3.03822 -2.98030 -5.24750 </div><div class='input'><span class='fu'><a href='endpoints.html'>endpoints</a></span>(<span class='no'>fit</span>)</div><div class='output co'>#> $ff #> parent_sink parent_m1 m1_sink #> 0.485524 0.514476 1.000000 |