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-rw-r--r--docs/reference/mkinfit.html26
1 files changed, 13 insertions, 13 deletions
diff --git a/docs/reference/mkinfit.html b/docs/reference/mkinfit.html
index 5d8dd81c..54ca377f 100644
--- a/docs/reference/mkinfit.html
+++ b/docs/reference/mkinfit.html
@@ -422,8 +422,8 @@ Degradation Data. <em>Environments</em> 6(12) 124
<span class='no'>fit</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinfit</span>(<span class='st'>"FOMC"</span>, <span class='no'>FOCUS_2006_C</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
<span class='fu'><a href='https://rdrr.io/r/base/summary.html'>summary</a></span>(<span class='no'>fit</span>)</div><div class='output co'>#&gt; mkin version used for fitting: 0.9.50.2
#&gt; R version used for fitting: 4.0.0
-#&gt; Date of fit: Tue May 12 10:55:39 2020
-#&gt; Date of summary: Tue May 12 10:55:39 2020
+#&gt; Date of fit: Tue May 12 15:29:48 2020
+#&gt; Date of summary: Tue May 12 15:29:48 2020
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
@@ -507,7 +507,7 @@ Degradation Data. <em>Environments</em> 6(12) 124
<span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>))</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'><span class='co'># Fit the model to the FOCUS example dataset D using defaults</span>
<span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span>(<span class='fu'><a href='https://rdrr.io/r/base/system.time.html'>system.time</a></span>(<span class='no'>fit</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinfit</span>(<span class='no'>SFO_SFO</span>, <span class='no'>FOCUS_2006_D</span>,
<span class='kw'>solution_type</span> <span class='kw'>=</span> <span class='st'>"eigen"</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)))</div><div class='output co'>#&gt; <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='output co'>#&gt; User System verstrichen
-#&gt; 0.408 0.001 0.410 </div><div class='input'><span class='fu'><a href='parms.html'>parms</a></span>(<span class='no'>fit</span>)</div><div class='output co'>#&gt; parent_0 k_parent k_m1 f_parent_to_m1 sigma
+#&gt; 0.417 0.000 0.417 </div><div class='input'><span class='fu'><a href='parms.html'>parms</a></span>(<span class='no'>fit</span>)</div><div class='output co'>#&gt; parent_0 k_parent k_m1 f_parent_to_m1 sigma
#&gt; 99.598483222 0.098697734 0.005260651 0.514475962 3.125503875 </div><div class='input'><span class='fu'><a href='endpoints.html'>endpoints</a></span>(<span class='no'>fit</span>)</div><div class='output co'>#&gt; $ff
#&gt; parent_m1 parent_sink
#&gt; 0.514476 0.485524
@@ -597,7 +597,7 @@ Degradation Data. <em>Environments</em> 6(12) 124
#&gt; Sum of squared residuals at call 166: 371.2134
#&gt; Sum of squared residuals at call 168: 371.2134
#&gt; Negative log-likelihood at call 178: 97.22429</div><div class='output co'>#&gt; <span class='message'>Optimisation successfully terminated.</span></div><div class='output co'>#&gt; User System verstrichen
-#&gt; 0.353 0.000 0.352 </div><div class='input'><span class='fu'><a href='parms.html'>parms</a></span>(<span class='no'>fit.deSolve</span>)</div><div class='output co'>#&gt; parent_0 k_parent k_m1 f_parent_to_m1 sigma
+#&gt; 0.363 0.001 0.364 </div><div class='input'><span class='fu'><a href='parms.html'>parms</a></span>(<span class='no'>fit.deSolve</span>)</div><div class='output co'>#&gt; parent_0 k_parent k_m1 f_parent_to_m1 sigma
#&gt; 99.598480759 0.098697739 0.005260651 0.514475958 3.125503874 </div><div class='input'><span class='fu'><a href='endpoints.html'>endpoints</a></span>(<span class='no'>fit.deSolve</span>)</div><div class='output co'>#&gt; $ff
#&gt; parent_m1 parent_sink
#&gt; 0.514476 0.485524
@@ -631,8 +631,8 @@ Degradation Data. <em>Environments</em> 6(12) 124
<span class='no'>SFO_SFO.ff</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='st'>"m1"</span>),
<span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>), <span class='kw'>use_of_ff</span> <span class='kw'>=</span> <span class='st'>"max"</span>)</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'><span class='no'>f.noweight</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinfit</span>(<span class='no'>SFO_SFO.ff</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#&gt; <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'><span class='fu'><a href='https://rdrr.io/r/base/summary.html'>summary</a></span>(<span class='no'>f.noweight</span>)</div><div class='output co'>#&gt; mkin version used for fitting: 0.9.50.2
#&gt; R version used for fitting: 4.0.0
-#&gt; Date of fit: Tue May 12 10:55:44 2020
-#&gt; Date of summary: Tue May 12 10:55:44 2020
+#&gt; Date of fit: Tue May 12 15:29:53 2020
+#&gt; Date of summary: Tue May 12 15:29:53 2020
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - k_parent * parent
@@ -640,7 +640,7 @@ Degradation Data. <em>Environments</em> 6(12) 124
#&gt;
#&gt; Model predictions using solution type analytical
#&gt;
-#&gt; Fitted using 421 model solutions performed in 0.147 s
+#&gt; Fitted using 421 model solutions performed in 0.13 s
#&gt;
#&gt; Error model: Constant variance
#&gt;
@@ -753,8 +753,8 @@ Degradation Data. <em>Environments</em> 6(12) 124
#&gt; 120 m1 25.15 28.78984 -3.640e+00
#&gt; 120 m1 33.31 28.78984 4.520e+00</div><div class='input'><span class='no'>f.obs</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinfit</span>(<span class='no'>SFO_SFO.ff</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>error_model</span> <span class='kw'>=</span> <span class='st'>"obs"</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#&gt; <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'><span class='fu'><a href='https://rdrr.io/r/base/summary.html'>summary</a></span>(<span class='no'>f.obs</span>)</div><div class='output co'>#&gt; mkin version used for fitting: 0.9.50.2
#&gt; R version used for fitting: 4.0.0
-#&gt; Date of fit: Tue May 12 10:55:44 2020
-#&gt; Date of summary: Tue May 12 10:55:44 2020
+#&gt; Date of fit: Tue May 12 15:29:53 2020
+#&gt; Date of summary: Tue May 12 15:29:53 2020
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - k_parent * parent
@@ -762,7 +762,7 @@ Degradation Data. <em>Environments</em> 6(12) 124
#&gt;
#&gt; Model predictions using solution type analytical
#&gt;
-#&gt; Fitted using 978 model solutions performed in 0.334 s
+#&gt; Fitted using 978 model solutions performed in 0.337 s
#&gt;
#&gt; Error model: Variance unique to each observed variable
#&gt;
@@ -890,8 +890,8 @@ Degradation Data. <em>Environments</em> 6(12) 124
#&gt; 120 m1 25.15 28.80429 -3.654e+00
#&gt; 120 m1 33.31 28.80429 4.506e+00</div><div class='input'><span class='no'>f.tc</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinfit</span>(<span class='no'>SFO_SFO.ff</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>error_model</span> <span class='kw'>=</span> <span class='st'>"tc"</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#&gt; <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'><span class='fu'><a href='https://rdrr.io/r/base/summary.html'>summary</a></span>(<span class='no'>f.tc</span>)</div><div class='output co'>#&gt; mkin version used for fitting: 0.9.50.2
#&gt; R version used for fitting: 4.0.0
-#&gt; Date of fit: Tue May 12 10:55:45 2020
-#&gt; Date of summary: Tue May 12 10:55:45 2020
+#&gt; Date of fit: Tue May 12 15:29:54 2020
+#&gt; Date of summary: Tue May 12 15:29:54 2020
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - k_parent * parent
@@ -899,7 +899,7 @@ Degradation Data. <em>Environments</em> 6(12) 124
#&gt;
#&gt; Model predictions using solution type analytical
#&gt;
-#&gt; Fitted using 1875 model solutions performed in 0.643 s
+#&gt; Fitted using 1875 model solutions performed in 0.645 s
#&gt;
#&gt; Error model: Two-component variance function
#&gt;

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