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Diffstat (limited to 'docs/reference/mkinmod.html')
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diff --git a/docs/reference/mkinmod.html b/docs/reference/mkinmod.html index 81b62ae1..1c97048e 100644 --- a/docs/reference/mkinmod.html +++ b/docs/reference/mkinmod.html @@ -75,7 +75,7 @@ list of lists can be given in the speclist argument." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">mkin</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.50</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.50.1</span> </span> </div> @@ -205,15 +205,18 @@ applicable to give detailed information about the C function being built.</p></t <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2> <p>A list of class <code>mkinmod</code> for use with <code><a href='mkinfit.html'>mkinfit</a></code>, - containing, among others,</p> +containing, among others,</p> <dt>diffs</dt><dd><p>A vector of string representations of differential equations, one for - each modelling variable.</p></dd> - <dt>map</dt><dd><p>A list containing named character vectors for each observed variable, - specifying the modelling variables by which it is represented.</p></dd> - <dt>use_of_ff</dt><dd><p>The content of <code>use_of_ff</code> is passed on in this list component.</p></dd> - <dt>coefmat</dt><dd><p>The coefficient matrix, if the system of differential equations can be - represented by one.</p></dd> - <dt>cf</dt><dd><p>If generated, the compiled function as returned by cfunction.</p></dd> +each modelling variable.</p></dd> +<dt>map</dt><dd><p>A list containing named character vectors for each observed variable, +specifying the modelling variables by which it is represented.</p></dd> +<dt>use_of_ff</dt><dd><p>The content of <code>use_of_ff</code> is passed on in this list component.</p></dd> +<dt>deg_func</dt><dd><p>If generated, a function containing the solution of the degradation +model.</p></dd> +<dt>coefmat</dt><dd><p>The coefficient matrix, if the system of differential equations can be +represented by one.</p></dd> +<dt>cf</dt><dd><p>If generated, a compiled function calculating the derivatives as +returned by cfunction.</p></dd> <h2 class="hasAnchor" id="details"><a class="anchor" href="#details"></a>Details</h2> @@ -222,17 +225,17 @@ in the FOCUS and NAFTA guidance documents are used.</p> <h2 class="hasAnchor" id="note"><a class="anchor" href="#note"></a>Note</h2> <p>The IORE submodel is not well tested for metabolites. When using this - model for metabolites, you may want to read the second note in the help - page to <code><a href='mkinfit.html'>mkinfit</a></code>.</p> +model for metabolites, you may want to read the second note in the help +page to <code><a href='mkinfit.html'>mkinfit</a></code>.</p> <h2 class="hasAnchor" id="references"><a class="anchor" href="#references"></a>References</h2> <p>FOCUS (2006) “Guidance Document on Estimating Persistence - and Degradation Kinetics from Environmental Fate Studies on Pesticides in - EU Registration” Report of the FOCUS Work Group on Degradation Kinetics, - EC Document Reference Sanco/10058/2005 version 2.0, 434 pp, - <a href='http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics'>http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics</a></p> +and Degradation Kinetics from Environmental Fate Studies on Pesticides in +EU Registration” Report of the FOCUS Work Group on Degradation Kinetics, +EC Document Reference Sanco/10058/2005 version 2.0, 434 pp, +<a href='http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics'>http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics</a></p> <p>NAFTA Technical Working Group on Pesticides (not dated) Guidance for - Evaluating and Calculating Degradation Kinetics in Environmental Media</p> +Evaluating and Calculating Degradation Kinetics in Environmental Media</p> <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2> <pre class="examples"><div class='input'> @@ -252,7 +255,7 @@ in the FOCUS and NAFTA guidance documents are used.</p> <span class='no'>SFO_SFO</span> <span class='kw'><-</span> <span class='fu'>mkinmod</span>( <span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='st'>"m1"</span>), <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>), <span class='kw'>verbose</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#> Compilation argument: -#> /usr/lib/R/bin/R CMD SHLIB file1a1abf38df.c 2> file1a1abf38df.c.err.txt +#> /usr/lib/R/bin/R CMD SHLIB file15d32c282a7d.c 2> file15d32c282a7d.c.err.txt #> Program source: #> 1: #include <R.h> #> 2: |