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-rw-r--r--docs/reference/nlme.html25
1 files changed, 14 insertions, 11 deletions
diff --git a/docs/reference/nlme.html b/docs/reference/nlme.html
index 8ef7e7c9..b2d415dc 100644
--- a/docs/reference/nlme.html
+++ b/docs/reference/nlme.html
@@ -43,7 +43,7 @@
<meta property="og:description" content="These functions facilitate setting up a nonlinear mixed effects model for
an mmkin row object. An mmkin row object is essentially a list of mkinfit
objects that have been obtained by fitting the same model to a list of
-datasets." />
+datasets. They are used internally by the nlme.mmkin() method." />
@@ -112,6 +112,9 @@ datasets." />
<li>
<a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
</li>
+ <li>
+ <a href="../articles/web_only/benchmarks.html">Some benchmark timings</a>
+ </li>
</ul>
</li>
<li>
@@ -147,7 +150,7 @@ datasets." />
<p>These functions facilitate setting up a nonlinear mixed effects model for
an mmkin row object. An mmkin row object is essentially a list of mkinfit
objects that have been obtained by fitting the same model to a list of
-datasets.</p>
+datasets. They are used internally by the <code><a href='nlme.mmkin.html'>nlme.mmkin()</a></code> method.</p>
</div>
<pre class="usage"><span class='fu'>nlme_function</span>(<span class='no'>object</span>)
@@ -222,28 +225,28 @@ nlme for the case of a single grouping variable ds?</p>
#&gt; Model: value ~ nlme_f(name, time, parent_0, log_k_parent_sink)
#&gt; Data: grouped_data
#&gt; AIC BIC logLik
-#&gt; 252.7798 262.1358 -121.3899
+#&gt; 298.2781 307.7372 -144.1391
#&gt;
#&gt; Random effects:
#&gt; Formula: list(parent_0 ~ 1, log_k_parent_sink ~ 1)
#&gt; Level: ds
#&gt; Structure: Diagonal
-#&gt; parent_0 log_k_parent_sink Residual
-#&gt; StdDev: 0.0006768135 0.6800777 2.489397
+#&gt; parent_0 log_k_parent_sink Residual
+#&gt; StdDev: 0.9374733 0.7098105 3.83543
#&gt;
#&gt; Fixed effects: parent_0 + log_k_parent_sink ~ 1
-#&gt; Value Std.Error DF t-value p-value
-#&gt; parent_0 101.74884 0.6456014 44 157.60321 0
-#&gt; log_k_parent_sink -3.05575 0.4015811 44 -7.60929 0
+#&gt; Value Std.Error DF t-value p-value
+#&gt; parent_0 101.76838 1.1445444 45 88.91606 0
+#&gt; log_k_parent_sink -3.05444 0.4195622 45 -7.28008 0
#&gt; Correlation:
#&gt; prnt_0
-#&gt; log_k_parent_sink 0.026
+#&gt; log_k_parent_sink 0.034
#&gt;
#&gt; Standardized Within-Group Residuals:
#&gt; Min Q1 Med Q3 Max
-#&gt; -2.1317488 -0.6878121 0.0828385 0.8592270 2.9529864
+#&gt; -2.6169360 -0.2185329 0.0574070 0.5720937 3.0459868
#&gt;
-#&gt; Number of Observations: 48
+#&gt; Number of Observations: 49
#&gt; Number of Groups: 3 </div><div class='input'><span class='fu'><a href='https://rdrr.io/r/base/plot.html'>plot</a></span>(<span class='fu'><a href='https://rdrr.io/pkg/nlme/man/augPred.html'>augPred</a></span>(<span class='no'>m_nlme</span>, <span class='kw'>level</span> <span class='kw'>=</span> <span class='fl'>0</span>:<span class='fl'>1</span>), <span class='kw'>layout</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>3</span>, <span class='fl'>1</span>))</div><div class='img'><img src='nlme-1.png' alt='' width='700' height='433' /></div><div class='input'># augPred does not seem to work on fits with more than one state
# variable

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