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diff --git a/docs/reference/summary.saem.mmkin.html b/docs/reference/summary.saem.mmkin.html index bf42a4d9..4c9f0d17 100644 --- a/docs/reference/summary.saem.mmkin.html +++ b/docs/reference/summary.saem.mmkin.html @@ -1,82 +1,69 @@ <!DOCTYPE html> -<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Lists model equations, initial parameter values, optimised parameters +<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Summary method for class "saem.mmkin" — summary.saem.mmkin • mkin</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Summary method for class " saem.mmkin summary.saem.mmkin><meta name="description" content="Lists model equations, initial parameter values, optimised parameters for fixed effects (population), random effects (deviations from the population mean) and residual error model, as well as the resulting endpoints such as formation fractions and DT50 values. Optionally -(default is FALSE), the data are listed in full."><title>Summary method for class "saem.mmkin" — summary.saem.mmkin • mkin</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.2.2/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.2.2/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Summary method for class " saem.mmkin summary.saem.mmkin><meta property="og:description" content="Lists model equations, initial parameter values, optimised parameters +(default is FALSE), the data are listed in full."><meta property="og:description" content="Lists model equations, initial parameter values, optimised parameters for fixed effects (population), random effects (deviations from the population mean) and residual error model, as well as the resulting endpoints such as formation fractions and DT50 values. Optionally -(default is FALSE), the data are listed in full."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]> -<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script> -<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script> -<![endif]--></head><body> +(default is FALSE), the data are listed in full."></head><body> <a href="#main" class="visually-hidden-focusable">Skip to contents</a> - - <nav class="navbar fixed-top navbar-default navbar-expand-lg bg-light"><div class="container"> - + + <nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="default" aria-label="Site navigation"><div class="container"> + <a class="navbar-brand me-2" href="../index.html">mkin</a> - 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+ </div> </nav><div class="container template-reference-topic"> <div class="row"> <main id="main" class="col-md-9"><div class="page-header"> - <img src="" class="logo" alt=""><h1>Summary method for class "saem.mmkin"</h1> + + <h1>Summary method for class "saem.mmkin"</h1> <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/R/summary.saem.mmkin.R" class="external-link"><code>R/summary.saem.mmkin.R</code></a></small> <div class="d-none name"><code>summary.saem.mmkin.Rd</code></div> </div> @@ -91,7 +78,7 @@ endpoints such as formation fractions and DT50 values. Optionally <div class="section level2"> <h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2> - <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for saem.mmkin</span></span> + <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for class 'saem.mmkin'</span></span> <span><span class="fu"><a href="https://rdrr.io/pkg/saemix/man/summary-methods.html" class="external-link">summary</a></span><span class="op">(</span></span> <span> <span class="va">object</span>,</span> <span> data <span class="op">=</span> <span class="cn">FALSE</span>,</span> @@ -102,61 +89,59 @@ endpoints such as formation fractions and DT50 values. Optionally <span> <span class="va">...</span></span> <span><span class="op">)</span></span> <span></span> -<span><span class="co"># S3 method for summary.saem.mmkin</span></span> +<span><span class="co"># S3 method for class 'summary.saem.mmkin'</span></span> <span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">x</span>, digits <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/Extremes.html" class="external-link">max</a></span><span class="op">(</span><span class="fl">3</span>, <span class="fu"><a href="https://rdrr.io/r/base/options.html" class="external-link">getOption</a></span><span class="op">(</span><span class="st">"digits"</span><span class="op">)</span> <span class="op">-</span> <span class="fl">3</span><span class="op">)</span>, verbose <span class="op">=</span> <span class="va">x</span><span class="op">$</span><span class="va">verbose</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div> </div> <div class="section level2"> <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2> - <dl><dt>object</dt> + + +<dl><dt id="arg-object">object<a class="anchor" aria-label="anchor" href="#arg-object"></a></dt> <dd><p>an object of class <a href="saem.html">saem.mmkin</a></p></dd> -<dt>data</dt> +<dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt> <dd><p>logical, indicating whether the full data should be included in the summary.</p></dd> -<dt>verbose</dt> +<dt id="arg-verbose">verbose<a class="anchor" aria-label="anchor" href="#arg-verbose"></a></dt> <dd><p>Should the summary be verbose?</p></dd> -<dt>covariates</dt> +<dt id="arg-covariates">covariates<a class="anchor" aria-label="anchor" href="#arg-covariates"></a></dt> <dd><p>Numeric vector with covariate values for all variables in any covariate models in the object. If given, it overrides 'covariate_quantile'.</p></dd> -<dt>covariate_quantile</dt> +<dt id="arg-covariate-quantile">covariate_quantile<a class="anchor" aria-label="anchor" href="#arg-covariate-quantile"></a></dt> <dd><p>This argument only has an effect if the fitted object has covariate models. If so, the default is to show endpoints for the median of the covariate values (50th percentile).</p></dd> -<dt>distimes</dt> +<dt id="arg-distimes">distimes<a class="anchor" aria-label="anchor" href="#arg-distimes"></a></dt> <dd><p>logical, indicating whether DT50 and DT90 values should be included.</p></dd> -<dt>...</dt> +<dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt> <dd><p>optional arguments passed to methods like <code>print</code>.</p></dd> -<dt>x</dt> +<dt id="arg-x">x<a class="anchor" aria-label="anchor" href="#arg-x"></a></dt> <dd><p>an object of class summary.saem.mmkin</p></dd> -<dt>digits</dt> +<dt id="arg-digits">digits<a class="anchor" aria-label="anchor" href="#arg-digits"></a></dt> <dd><p>Number of digits to use for printing</p></dd> </dl></div> <div class="section level2"> <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> - - -<p>The summary function returns a list based on the <a href="https://rdrr.io/pkg/saemix/man/SaemixObject-class.html" class="external-link">saemix::SaemixObject</a></p> - - -<p>obtained in the fit, with at least the following additional components</p> + <p>The summary function returns a list based on the <a href="https://rdrr.io/pkg/saemix/man/SaemixObject-class.html" class="external-link">saemix::SaemixObject</a> +obtained in the fit, with at least the following additional components</p> <dl><dt>saemixversion, mkinversion, Rversion</dt> <dd><p>The saemix, mkin and R versions used</p></dd> @@ -258,21 +243,21 @@ saemix authors for the parts inherited from saemix.</p> <span class="r-out co"><span class="r-pr">#></span> 810.8 805.4 -391.4</span> <span class="r-out co"><span class="r-pr">#></span> </span> <span class="r-out co"><span class="r-pr">#></span> Fitted parameters:</span> -<span class="r-out co"><span class="r-pr">#></span> estimate lower upper</span> -<span class="r-out co"><span class="r-pr">#></span> parent_0 100.966822 97.90584 104.0278</span> -<span class="r-out co"><span class="r-pr">#></span> log_k_m1 -4.076164 -4.17485 -3.9775</span> -<span class="r-out co"><span class="r-pr">#></span> f_parent_qlogis -0.940902 -1.35358 -0.5282</span> -<span class="r-out co"><span class="r-pr">#></span> log_k1 -2.363988 -2.71690 -2.0111</span> -<span class="r-out co"><span class="r-pr">#></span> log_k2 -4.060016 -4.21743 -3.9026</span> -<span class="r-out co"><span class="r-pr">#></span> g_qlogis -0.029999 -0.44766 0.3877</span> -<span class="r-out co"><span class="r-pr">#></span> a.1 0.876272 0.67308 1.0795</span> -<span class="r-out co"><span class="r-pr">#></span> b.1 0.079594 0.06399 0.0952</span> -<span class="r-out co"><span class="r-pr">#></span> SD.parent_0 0.076322 -76.47330 76.6259</span> -<span class="r-out co"><span class="r-pr">#></span> SD.log_k_m1 0.005052 -1.09071 1.1008</span> -<span class="r-out co"><span class="r-pr">#></span> SD.f_parent_qlogis 0.446968 0.16577 0.7282</span> -<span class="r-out co"><span class="r-pr">#></span> SD.log_k1 0.348786 0.09502 0.6025</span> -<span class="r-out co"><span class="r-pr">#></span> SD.log_k2 0.147456 0.03111 0.2638</span> -<span class="r-out co"><span class="r-pr">#></span> SD.g_qlogis 0.348244 0.02794 0.6686</span> +<span class="r-out co"><span class="r-pr">#></span> estimate lower upper</span> +<span class="r-out co"><span class="r-pr">#></span> parent_0 100.966822 97.90584 104.02780</span> +<span class="r-out co"><span class="r-pr">#></span> log_k_m1 -4.076164 -4.17485 -3.97748</span> +<span class="r-out co"><span class="r-pr">#></span> f_parent_qlogis -0.940902 -1.35358 -0.52823</span> +<span class="r-out co"><span class="r-pr">#></span> log_k1 -2.363988 -2.71690 -2.01107</span> +<span class="r-out co"><span class="r-pr">#></span> log_k2 -4.060016 -4.21743 -3.90260</span> +<span class="r-out co"><span class="r-pr">#></span> g_qlogis -0.029999 -0.44766 0.38766</span> +<span class="r-out co"><span class="r-pr">#></span> a.1 0.876272 0.67790 1.07464</span> +<span class="r-out co"><span class="r-pr">#></span> b.1 0.079594 0.06521 0.09398</span> +<span class="r-out co"><span class="r-pr">#></span> SD.parent_0 0.076322 -76.45825 76.61089</span> +<span class="r-out co"><span class="r-pr">#></span> SD.log_k_m1 0.005052 -1.08943 1.09953</span> +<span class="r-out co"><span class="r-pr">#></span> SD.f_parent_qlogis 0.446968 0.16577 0.72816</span> +<span class="r-out co"><span class="r-pr">#></span> SD.log_k1 0.348786 0.09502 0.60255</span> +<span class="r-out co"><span class="r-pr">#></span> SD.log_k2 0.147456 0.03111 0.26380</span> +<span class="r-out co"><span class="r-pr">#></span> SD.g_qlogis 0.348244 0.02794 0.66854</span> <span class="r-in"><span><span class="fu"><a href="illparms.html">illparms</a></span><span class="op">(</span><span class="va">f_saem_dfop_sfo</span><span class="op">)</span></span></span> <span class="r-out co"><span class="r-pr">#></span> [1] "sd(parent_0)" "sd(log_k_m1)"</span> <span class="r-in"><span><span class="va">f_saem_dfop_sfo_2</span> <span class="op"><-</span> <span class="fu"><a href="https://rdrr.io/r/stats/update.html" class="external-link">update</a></span><span class="op">(</span><span class="va">f_saem_dfop_sfo</span>,</span></span> @@ -292,21 +277,21 @@ saemix authors for the parts inherited from saemix.</p> <span class="r-out co"><span class="r-pr">#></span> </span> <span class="r-out co"><span class="r-pr">#></span> Random effects:</span> <span class="r-out co"><span class="r-pr">#></span> lower est. upper</span> -<span class="r-out co"><span class="r-pr">#></span> sd(f_parent_qlogis) 0.16515100 0.4448330 0.7245149</span> -<span class="r-out co"><span class="r-pr">#></span> sd(log_k1) 0.08982372 0.3447403 0.5996568</span> -<span class="r-out co"><span class="r-pr">#></span> sd(log_k2) 0.02806589 0.1419560 0.2558462</span> -<span class="r-out co"><span class="r-pr">#></span> sd(g_qlogis) 0.04908160 0.3801993 0.7113170</span> +<span class="r-out co"><span class="r-pr">#></span> sd(f_parent_qlogis) 0.16515113 0.4448330 0.7245148</span> +<span class="r-out co"><span class="r-pr">#></span> sd(log_k1) 0.08982399 0.3447403 0.5996565</span> +<span class="r-out co"><span class="r-pr">#></span> sd(log_k2) 0.02806780 0.1419560 0.2558443</span> +<span class="r-out co"><span class="r-pr">#></span> sd(g_qlogis) 0.04908644 0.3801993 0.7113121</span> <span class="r-out co"><span class="r-pr">#></span> </span> <span class="r-out co"><span class="r-pr">#></span> </span> <span class="r-out co"><span class="r-pr">#></span> lower est. upper</span> -<span class="r-out co"><span class="r-pr">#></span> a.1 0.67539922 0.87630147 1.07720371</span> -<span class="r-out co"><span class="r-pr">#></span> b.1 0.06401324 0.07920531 0.09439739</span> +<span class="r-out co"><span class="r-pr">#></span> a.1 0.67993373 0.87630147 1.07266921</span> +<span class="r-out co"><span class="r-pr">#></span> b.1 0.06522297 0.07920531 0.09318766</span> <span class="r-in"><span><span class="fu"><a href="https://rdrr.io/pkg/saemix/man/summary-methods.html" class="external-link">summary</a></span><span class="op">(</span><span class="va">f_saem_dfop_sfo_2</span>, data <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span> -<span class="r-out co"><span class="r-pr">#></span> saemix version used for fitting: 3.2 </span> -<span class="r-out co"><span class="r-pr">#></span> mkin version used for pre-fitting: 1.2.6 </span> -<span class="r-out co"><span class="r-pr">#></span> R version used for fitting: 4.3.2 </span> -<span class="r-out co"><span class="r-pr">#></span> Date of fit: Thu Nov 16 04:19:57 2023 </span> -<span class="r-out co"><span class="r-pr">#></span> Date of summary: Thu Nov 16 04:19:57 2023 </span> +<span class="r-out co"><span class="r-pr">#></span> saemix version used for fitting: 3.3 </span> +<span class="r-out co"><span class="r-pr">#></span> mkin version used for pre-fitting: 1.2.9 </span> +<span class="r-out co"><span class="r-pr">#></span> R version used for fitting: 4.4.2 </span> +<span class="r-out co"><span class="r-pr">#></span> Date of fit: Thu Feb 13 15:01:30 2025 </span> +<span class="r-out co"><span class="r-pr">#></span> Date of summary: Thu Feb 13 15:01:30 2025 </span> <span class="r-out co"><span class="r-pr">#></span> </span> <span class="r-out co"><span class="r-pr">#></span> Equations:</span> <span class="r-out co"><span class="r-pr">#></span> d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *</span> @@ -321,7 +306,7 @@ saemix authors for the parts inherited from saemix.</p> <span class="r-out co"><span class="r-pr">#></span> </span> <span class="r-out co"><span class="r-pr">#></span> Model predictions using solution type analytical </span> <span class="r-out co"><span class="r-pr">#></span> </span> -<span class="r-out co"><span class="r-pr">#></span> Fitted in 9.193 s</span> +<span class="r-out co"><span class="r-pr">#></span> Fitted in 9.035 s</span> <span class="r-out co"><span class="r-pr">#></span> Using 300, 100 iterations and 10 chains</span> <span class="r-out co"><span class="r-pr">#></span> </span> <span class="r-out co"><span class="r-pr">#></span> Variance model: Two-component variance function </span> @@ -355,19 +340,19 @@ saemix authors for the parts inherited from saemix.</p> <span class="r-out co"><span class="r-pr">#></span> 806.9 802.2 -391.5</span> <span class="r-out co"><span class="r-pr">#></span> </span> <span class="r-out co"><span class="r-pr">#></span> Optimised parameters:</span> -<span class="r-out co"><span class="r-pr">#></span> est. lower upper</span> -<span class="r-out co"><span class="r-pr">#></span> parent_0 101.09951 98.04247 104.1565</span> -<span class="r-out co"><span class="r-pr">#></span> log_k_m1 -4.08178 -4.18057 -3.9830</span> -<span class="r-out co"><span class="r-pr">#></span> f_parent_qlogis -0.94779 -1.35855 -0.5370</span> -<span class="r-out co"><span class="r-pr">#></span> log_k1 -2.33940 -2.69122 -1.9876</span> -<span class="r-out co"><span class="r-pr">#></span> log_k2 -4.05027 -4.20262 -3.8979</span> -<span class="r-out co"><span class="r-pr">#></span> g_qlogis -0.06529 -0.50361 0.3730</span> -<span class="r-out co"><span class="r-pr">#></span> a.1 0.87630 0.67540 1.0772</span> -<span class="r-out co"><span class="r-pr">#></span> b.1 0.07921 0.06401 0.0944</span> -<span class="r-out co"><span class="r-pr">#></span> SD.f_parent_qlogis 0.44483 0.16515 0.7245</span> -<span class="r-out co"><span class="r-pr">#></span> SD.log_k1 0.34474 0.08982 0.5997</span> -<span class="r-out co"><span class="r-pr">#></span> SD.log_k2 0.14196 0.02807 0.2558</span> -<span class="r-out co"><span class="r-pr">#></span> SD.g_qlogis 0.38020 0.04908 0.7113</span> +<span class="r-out co"><span class="r-pr">#></span> est. lower upper</span> +<span class="r-out co"><span class="r-pr">#></span> parent_0 101.09951 98.04247 104.15655</span> +<span class="r-out co"><span class="r-pr">#></span> log_k_m1 -4.08178 -4.18057 -3.98300</span> +<span class="r-out co"><span class="r-pr">#></span> f_parent_qlogis -0.94779 -1.35855 -0.53704</span> +<span class="r-out co"><span class="r-pr">#></span> log_k1 -2.33940 -2.69122 -1.98759</span> +<span class="r-out co"><span class="r-pr">#></span> log_k2 -4.05027 -4.20262 -3.89791</span> +<span class="r-out co"><span class="r-pr">#></span> g_qlogis -0.06529 -0.50361 0.37303</span> +<span class="r-out co"><span class="r-pr">#></span> a.1 0.87630 0.67993 1.07267</span> +<span class="r-out co"><span class="r-pr">#></span> b.1 0.07921 0.06522 0.09319</span> +<span class="r-out co"><span class="r-pr">#></span> SD.f_parent_qlogis 0.44483 0.16515 0.72451</span> +<span class="r-out co"><span class="r-pr">#></span> SD.log_k1 0.34474 0.08982 0.59966</span> +<span class="r-out co"><span class="r-pr">#></span> SD.log_k2 0.14196 0.02807 0.25584</span> +<span class="r-out co"><span class="r-pr">#></span> SD.g_qlogis 0.38020 0.04909 0.71131</span> <span class="r-out co"><span class="r-pr">#></span> </span> <span class="r-out co"><span class="r-pr">#></span> Correlation: </span> <span class="r-out co"><span class="r-pr">#></span> parnt_0 lg_k_m1 f_prnt_ log_k1 log_k2 </span> @@ -382,12 +367,12 @@ saemix authors for the parts inherited from saemix.</p> <span class="r-out co"><span class="r-pr">#></span> SD.f_parent_qlogis 0.4448 0.16515 0.7245</span> <span class="r-out co"><span class="r-pr">#></span> SD.log_k1 0.3447 0.08982 0.5997</span> <span class="r-out co"><span class="r-pr">#></span> SD.log_k2 0.1420 0.02807 0.2558</span> -<span class="r-out co"><span class="r-pr">#></span> SD.g_qlogis 0.3802 0.04908 0.7113</span> +<span class="r-out co"><span class="r-pr">#></span> SD.g_qlogis 0.3802 0.04909 0.7113</span> <span class="r-out co"><span class="r-pr">#></span> </span> <span class="r-out co"><span class="r-pr">#></span> Variance model:</span> -<span class="r-out co"><span class="r-pr">#></span> est. lower upper</span> -<span class="r-out co"><span class="r-pr">#></span> a.1 0.87630 0.67540 1.0772</span> -<span class="r-out co"><span class="r-pr">#></span> b.1 0.07921 0.06401 0.0944</span> +<span class="r-out co"><span class="r-pr">#></span> est. lower upper</span> +<span class="r-out co"><span class="r-pr">#></span> a.1 0.87630 0.67993 1.07267</span> +<span class="r-out co"><span class="r-pr">#></span> b.1 0.07921 0.06522 0.09319</span> <span class="r-out co"><span class="r-pr">#></span> </span> <span class="r-out co"><span class="r-pr">#></span> Backtransformed parameters:</span> <span class="r-out co"><span class="r-pr">#></span> est. lower upper</span> @@ -600,17 +585,17 @@ saemix authors for the parts inherited from saemix.</p> <span class="r-out co"><span class="r-pr">#></span> g 0.35506898 0.46263682 0.57379888</span> <span class="r-out co"><span class="r-pr">#></span> </span> <span class="r-out co"><span class="r-pr">#></span> Random effects:</span> -<span class="r-out co"><span class="r-pr">#></span> lower est. upper</span> -<span class="r-out co"><span class="r-pr">#></span> sd(f_parent_qlogis) 0.3827416 0.4435866 0.5044315</span> -<span class="r-out co"><span class="r-pr">#></span> sd(log_k1) 0.1226277 0.2981783 0.4737289</span> -<span class="r-out co"><span class="r-pr">#></span> sd(log_k2) -0.5457764 0.1912531 0.9282825</span> -<span class="r-out co"><span class="r-pr">#></span> sd(g_qlogis) 0.1483976 0.3997298 0.6510619</span> -<span class="r-out co"><span class="r-pr">#></span> corr(log_k2,g_qlogis) -0.8537145 -0.5845703 -0.3154261</span> +<span class="r-out co"><span class="r-pr">#></span> lower est. upper</span> +<span class="r-out co"><span class="r-pr">#></span> sd(f_parent_qlogis) 0.16472883 0.4435866 0.7224443</span> +<span class="r-out co"><span class="r-pr">#></span> sd(log_k1) 0.05323856 0.2981783 0.5431180</span> +<span class="r-out co"><span class="r-pr">#></span> sd(log_k2) 0.05013379 0.1912531 0.3323723</span> +<span class="r-out co"><span class="r-pr">#></span> sd(g_qlogis) 0.04710647 0.3997298 0.7523531</span> +<span class="r-out co"><span class="r-pr">#></span> corr(log_k2,g_qlogis) -1.31087397 -0.5845703 0.1417334</span> <span class="r-out co"><span class="r-pr">#></span> </span> <span class="r-out co"><span class="r-pr">#></span> </span> -<span class="r-out co"><span class="r-pr">#></span> lower est. upper</span> -<span class="r-out co"><span class="r-pr">#></span> a.1 0.6732869 0.87421677 1.0751467</span> -<span class="r-out co"><span class="r-pr">#></span> b.1 0.0640392 0.07925135 0.0944635</span> +<span class="r-out co"><span class="r-pr">#></span> lower est. upper</span> +<span class="r-out co"><span class="r-pr">#></span> a.1 0.67769608 0.87421677 1.07073746</span> +<span class="r-out co"><span class="r-pr">#></span> b.1 0.06525119 0.07925135 0.09325151</span> <span class="r-in"><span><span class="co"># The correlation does not improve the fit judged by AIC and BIC, although</span></span></span> <span class="r-in"><span><span class="co"># the likelihood is higher with the additional parameter</span></span></span> <span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/stats/anova.html" class="external-link">anova</a></span><span class="op">(</span><span class="va">f_saem_dfop_sfo</span>, <span class="va">f_saem_dfop_sfo_2</span>, <span class="va">f_saem_dfop_sfo_3</span><span class="op">)</span></span></span> @@ -624,23 +609,23 @@ saemix authors for the parts inherited from saemix.</p> <span class="r-in"><span></span></span> </code></pre></div> </div> - </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2> + </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2> </nav></aside></div> <footer><div class="pkgdown-footer-left"> - <p></p><p>Developed by Johannes Ranke.</p> + <p>Developed by Johannes Ranke.</p> </div> <div class="pkgdown-footer-right"> - <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p> </div> </footer></div> - - + + </body></html> |