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-rw-r--r--docs/reference/synthetic_data_for_UBA_2014.html32
1 files changed, 16 insertions, 16 deletions
diff --git a/docs/reference/synthetic_data_for_UBA_2014.html b/docs/reference/synthetic_data_for_UBA_2014.html
index a639151b..ddc88c21 100644
--- a/docs/reference/synthetic_data_for_UBA_2014.html
+++ b/docs/reference/synthetic_data_for_UBA_2014.html
@@ -278,12 +278,13 @@ Compare also the code in the example section to see the degradation models." />
<span class='co'># This is just one example of an evaluation using the kinetic model used for</span>
<span class='co'># the generation of the data</span>
-<span class='no'>fit</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>m_synth_SFO_lin</span>, <span class='no'>synthetic_data_for_UBA_2014</span><span class='kw'>[[</span><span class='fl'>1</span>]]$<span class='no'>data</span>,
- <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
-<span class='fu'><a href='plot.mkinfit.html'>plot_sep</a></span>(<span class='no'>fit</span>)</div><div class='img'><img src='synthetic_data_for_UBA_2014-1.png' alt='' width='700' height='433' /></div><div class='input'><span class='fu'><a href='https://rdrr.io/r/base/summary.html'>summary</a></span>(<span class='no'>fit</span>)</div><div class='output co'>#&gt; mkin version used for fitting: 0.9.49.6
+<span class='co'># \dontrun{</span>
+ <span class='no'>fit</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>m_synth_SFO_lin</span>, <span class='no'>synthetic_data_for_UBA_2014</span><span class='kw'>[[</span><span class='fl'>1</span>]]$<span class='no'>data</span>,
+ <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
+ <span class='fu'><a href='plot.mkinfit.html'>plot_sep</a></span>(<span class='no'>fit</span>)</div><div class='img'><img src='synthetic_data_for_UBA_2014-1.png' alt='' width='700' height='433' /></div><div class='input'> <span class='fu'><a href='https://rdrr.io/r/base/summary.html'>summary</a></span>(<span class='no'>fit</span>)</div><div class='output co'>#&gt; mkin version used for fitting: 0.9.49.6
#&gt; R version used for fitting: 3.6.1
-#&gt; Date of fit: Thu Sep 19 12:48:50 2019
-#&gt; Date of summary: Thu Sep 19 12:48:50 2019
+#&gt; Date of fit: Mon Oct 21 18:52:20 2019
+#&gt; Date of summary: Mon Oct 21 18:52:20 2019
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - k_parent * parent
@@ -292,21 +293,20 @@ Compare also the code in the example section to see the degradation models." />
#&gt;
#&gt; Model predictions using solution type deSolve
#&gt;
-#&gt; Fitted using 847 model solutions performed in 2.49 s
+#&gt; Fitted using 847 model solutions performed in 2.42 s
#&gt;
#&gt; Error model: Constant variance
#&gt;
#&gt; Error model algorithm: OLS
#&gt;
#&gt; Starting values for parameters to be optimised:
-#&gt; value type
-#&gt; parent_0 101.350000 state
-#&gt; k_parent 0.100000 deparm
-#&gt; k_M1 0.100100 deparm
-#&gt; k_M2 0.100200 deparm
-#&gt; f_parent_to_M1 0.500000 deparm
-#&gt; f_M1_to_M2 0.500000 deparm
-#&gt; sigma 2.273126 error
+#&gt; value type
+#&gt; parent_0 101.3500 state
+#&gt; k_parent 0.1000 deparm
+#&gt; k_M1 0.1001 deparm
+#&gt; k_M2 0.1002 deparm
+#&gt; f_parent_to_M1 0.5000 deparm
+#&gt; f_M1_to_M2 0.5000 deparm
#&gt;
#&gt; Starting values for the transformed parameters actually optimised:
#&gt; value lower upper
@@ -316,7 +316,6 @@ Compare also the code in the example section to see the degradation models." />
#&gt; log_k_M2 -2.300587 -Inf Inf
#&gt; f_parent_ilr_1 0.000000 -Inf Inf
#&gt; f_M1_ilr_1 0.000000 -Inf Inf
-#&gt; sigma 2.273126 0 Inf
#&gt;
#&gt; Fixed parameter values:
#&gt; value type
@@ -424,7 +423,8 @@ Compare also the code in the example section to see the degradation models." />
#&gt; 90 M2 10.6 1.013e+01 0.47130
#&gt; 90 M2 10.8 1.013e+01 0.67130
#&gt; 120 M2 9.8 5.521e+00 4.27893
-#&gt; 120 M2 3.3 5.521e+00 -2.22107</div></pre>
+#&gt; 120 M2 3.3 5.521e+00 -2.22107</div><div class='input'># }
+</div></pre>
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