diff options
Diffstat (limited to 'docs/reference/test_data_from_UBA_2014.html')
| -rw-r--r-- | docs/reference/test_data_from_UBA_2014.html | 54 |
1 files changed, 36 insertions, 18 deletions
diff --git a/docs/reference/test_data_from_UBA_2014.html b/docs/reference/test_data_from_UBA_2014.html index 11cb6420..bc988340 100644 --- a/docs/reference/test_data_from_UBA_2014.html +++ b/docs/reference/test_data_from_UBA_2014.html @@ -159,13 +159,20 @@ <span class='co'># model).</span> <span class='no'>m_ws</span> <span class='kw'><-</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span>(<span class='kw'>parent_w</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='st'>"parent_s"</span>), <span class='kw'>parent_s</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='st'>"parent_w"</span>))</div><div class='output co'>#> <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'> <span class='no'>f_river</span> <span class='kw'><-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>m_ws</span>, <span class='no'>test_data_from_UBA_2014</span><span class='kw'>[[</span><span class='fl'>1</span>]]$<span class='no'>data</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#> <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'> <span class='fu'><a href='plot.mkinfit.html'>plot_sep</a></span>(<span class='no'>f_river</span>)</div><div class='img'><img src='test_data_from_UBA_2014-1.png' alt='' width='700' height='433' /></div><div class='input'> - <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='no'>f_river</span>)$<span class='no'>bpar</span></div><div class='output co'>#> <span class='warning'>Warning: Could not calculate correlation; no covariance matrix</span></div><div class='output co'>#> Estimate se_notrans t value Pr(>t) Lower Upper -#> parent_w_0 9.598567e+01 NA NA NA NA NA -#> k_parent_w_sink 3.603743e-01 NA NA NA NA NA -#> k_parent_w_parent_s 6.031371e-02 NA NA NA NA NA -#> k_parent_s_sink 5.108964e-11 NA NA NA NA NA -#> k_parent_s_parent_w 7.419672e-02 NA NA NA NA NA -#> sigma 2.982879e+00 NA NA NA NA NA</div><div class='input'> <span class='fu'><a href='mkinerrmin.html'>mkinerrmin</a></span>(<span class='no'>f_river</span>)</div><div class='output co'>#> err.min n.optim df + <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='no'>f_river</span>)$<span class='no'>bpar</span></div><div class='output co'>#> Estimate se_notrans t value Pr(>t) +#> parent_w_0 9.598567e+01 2.12351789 4.520126e+01 9.476190e-18 +#> k_parent_w_sink 3.603743e-01 0.03149282 1.144306e+01 4.126593e-09 +#> k_parent_w_parent_s 6.031371e-02 0.01603582 3.761186e+00 9.436275e-04 +#> k_parent_s_sink 5.108964e-11 0.09482736 5.387647e-10 5.000000e-01 +#> k_parent_s_parent_w 7.419672e-02 0.10737376 6.910135e-01 2.500560e-01 +#> sigma 2.982879e+00 0.50545649 5.901356e+00 1.454535e-05 +#> Lower Upper +#> parent_w_0 91.48420503 100.4871438 +#> k_parent_w_sink 0.30668904 0.4234571 +#> k_parent_w_parent_s 0.03423904 0.1062455 +#> k_parent_s_sink 0.00000000 Inf +#> k_parent_s_parent_w 0.02289956 0.2404043 +#> sigma 2.00184022 3.9639169</div><div class='input'> <span class='fu'><a href='mkinerrmin.html'>mkinerrmin</a></span>(<span class='no'>f_river</span>)</div><div class='output co'>#> err.min n.optim df #> All data 0.09246946 5 6 #> parent_w 0.06377096 3 3 #> parent_s 0.20882325 2 3</div><div class='input'> @@ -176,17 +183,28 @@ <span class='kw'>M2</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='st'>"M3"</span>), <span class='kw'>M3</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>), <span class='kw'>use_of_ff</span> <span class='kw'>=</span> <span class='st'>"max"</span>)</div><div class='output co'>#> <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'> - <span class='no'>f_soil</span> <span class='kw'><-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>m_soil</span>, <span class='no'>test_data_from_UBA_2014</span><span class='kw'>[[</span><span class='fl'>3</span>]]$<span class='no'>data</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#> <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'> <span class='fu'><a href='plot.mkinfit.html'>plot_sep</a></span>(<span class='no'>f_soil</span>, <span class='kw'>lpos</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='st'>"topright"</span>, <span class='st'>"topright"</span>, <span class='st'>"topright"</span>, <span class='st'>"bottomright"</span>))</div><div class='img'><img src='test_data_from_UBA_2014-2.png' alt='' width='700' height='433' /></div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='no'>f_soil</span>)$<span class='no'>bpar</span></div><div class='output co'>#> <span class='warning'>Warning: Could not calculate correlation; no covariance matrix</span></div><div class='output co'>#> Estimate se_notrans t value Pr(>t) Lower Upper -#> parent_0 76.55425584 NA NA NA NA NA -#> k_parent 0.12081956 NA NA NA NA NA -#> k_M1 0.84258649 NA NA NA NA NA -#> k_M2 0.04210878 NA NA NA NA NA -#> k_M3 0.01122919 NA NA NA NA NA -#> f_parent_to_M1 0.32240199 NA NA NA NA NA -#> f_parent_to_M2 0.16099854 NA NA NA NA NA -#> f_M1_to_M3 0.27921501 NA NA NA NA NA -#> f_M2_to_M3 0.55641331 NA NA NA NA NA -#> sigma 1.14005399 NA NA NA NA NA</div><div class='input'> <span class='fu'><a href='mkinerrmin.html'>mkinerrmin</a></span>(<span class='no'>f_soil</span>)</div><div class='output co'>#> err.min n.optim df + <span class='no'>f_soil</span> <span class='kw'><-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>m_soil</span>, <span class='no'>test_data_from_UBA_2014</span><span class='kw'>[[</span><span class='fl'>3</span>]]$<span class='no'>data</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#> <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'> <span class='fu'><a href='plot.mkinfit.html'>plot_sep</a></span>(<span class='no'>f_soil</span>, <span class='kw'>lpos</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='st'>"topright"</span>, <span class='st'>"topright"</span>, <span class='st'>"topright"</span>, <span class='st'>"bottomright"</span>))</div><div class='img'><img src='test_data_from_UBA_2014-2.png' alt='' width='700' height='433' /></div><div class='input'> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/summary'>summary</a></span>(<span class='no'>f_soil</span>)$<span class='no'>bpar</span></div><div class='output co'>#> Estimate se_notrans t value Pr(>t) Lower +#> parent_0 76.55425584 0.859186619 89.1008474 1.113866e-26 74.755959756 +#> k_parent 0.12081956 0.004601922 26.2541544 1.077373e-16 0.111561582 +#> k_M1 0.84258649 0.806231419 1.0450926 1.545475e-01 0.113839803 +#> k_M2 0.04210878 0.017083049 2.4649453 1.170195e-02 0.018013807 +#> k_M3 0.01122919 0.007245890 1.5497322 6.885127e-02 0.002909463 +#> f_parent_to_M1 0.32240199 0.240803555 1.3388589 9.820820e-02 NA +#> f_parent_to_M2 0.16099854 0.033691991 4.7785403 6.531224e-05 NA +#> f_M1_to_M3 0.27921501 0.269443514 1.0362655 1.565440e-01 0.022992937 +#> f_M2_to_M3 0.55641331 0.595125445 0.9349513 1.807725e-01 0.008003317 +#> sigma 1.14005399 0.149696423 7.6157731 1.727024e-07 0.826735778 +#> Upper +#> parent_0 78.35255192 +#> k_parent 0.13084582 +#> k_M1 6.23641265 +#> k_M2 0.09843279 +#> k_M3 0.04333950 +#> f_parent_to_M1 NA +#> f_parent_to_M2 NA +#> f_M1_to_M3 0.86443083 +#> f_M2_to_M3 0.99489847 +#> sigma 1.45337221</div><div class='input'> <span class='fu'><a href='mkinerrmin.html'>mkinerrmin</a></span>(<span class='no'>f_soil</span>)</div><div class='output co'>#> err.min n.optim df #> All data 0.09649963 9 20 #> parent 0.04721283 2 6 #> M1 0.26551209 2 5 |