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diff --git a/docs/schaefer07_complex_case.html b/docs/schaefer07_complex_case.html new file mode 100644 index 00000000..23ed3a26 --- /dev/null +++ b/docs/schaefer07_complex_case.html @@ -0,0 +1,134 @@ +<!DOCTYPE html> +<html lang="en"> + <head> + <meta charset="utf-8"> +<title>schaefer07_complex_case. mkin 0.9.44.9000</title> +<meta name="viewport" content="width=device-width, initial-scale=1.0"> +<meta name="author" content=""> + +<link href="css/bootstrap.css" rel="stylesheet"> +<link href="css/bootstrap-responsive.css" rel="stylesheet"> +<link href="css/highlight.css" rel="stylesheet"> +<link href="css/staticdocs.css" rel="stylesheet"> + +<!--[if lt IE 9]> + <script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script> +<![endif]--> + +<script type="text/x-mathjax-config"> + MathJax.Hub.Config({ + tex2jax: { + inlineMath: [ ['$','$'], ["\\(","\\)"] ], + processEscapes: true + } + }); +</script> +<script type="text/javascript" + src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"> +</script> + </head> + + <body> + <div class="navbar"> + <div class="navbar-inner"> + <div class="container"> + <a class="brand" href="index.html">mkin 0.9.44.9000</a> + <div class="nav"> + <ul class="nav"> + <li><a href="index.html">Home</a></li> + <li><a href="reference.html">Reference</a></li> + </ul> + </div> + </div> + </div> +</div> + + + <div class="container"> + <header> + + </header> + + <h1> + Metabolism data set used for checking the software quality of KinGUI +</h1> + +<div class="row"> + <div class="span8"> + <h2>Usage</h2> + <pre><span class="functioncall"><a href='http://www.rdocumentation.org/packages/utils/topics/data'>data</a></span><span class="keyword">(</span><span class="symbol">schaefer07_complex_case</span><span class="keyword">)</span></pre> + + <div class="Description"> + <h2>Description</h2> + + <p>This dataset was used for a comparison of KinGUI and ModelMaker to check the + software quality of KinGUI in the original publication (Schäfer et al., 2007). + The results from the fitting are also included.</p> + + </div> + + <div class="Format"> + <h2>Format</h2> + + <p>The data set is a data frame with 8 observations on the following 6 variables. + <dl> + <dt><code>time</code></dt><dd>a numeric vector</dd></p> + + <p><dt><code>parent</code></dt><dd>a numeric vector</dd></p> + + <p><dt><code>A1</code></dt><dd>a numeric vector</dd></p> + + <p><dt><code>B1</code></dt><dd>a numeric vector</dd></p> + + <p><dt><code>C1</code></dt><dd>a numeric vector</dd></p> + + <p><dt><code>A2</code></dt><dd>a numeric vector</dd></p> + + <p></dl></p> + + <p>The results are a data frame with 14 results for different parameter values</p> + + </div> + + <div class="References"> + <h2>References</h2> + + <p>Schäfer D, Mikolasch B, Rainbird P and Harvey B (2007). KinGUI: a new kinetic + software tool for evaluations according to FOCUS degradation kinetics. In: Del + Re AAM, Capri E, Fragoulis G and Trevisan M (Eds.). Proceedings of the XIII + Symposium Pesticide Chemistry, Piacenza, 2007, p. 916-923.</p> + + </div> + + <h2 id="examples">Examples</h2> + <pre class="examples"><div class='input'><span class="symbol">data</span> <span class="assignement"><-</span> <span class="functioncall"><a href='mkin_wide_to_long.html'>mkin_wide_to_long</a></span><span class="keyword">(</span><span class="symbol">schaefer07_complex_case</span><span class="keyword">,</span> <span class="argument">time</span> <span class="argument">=</span> <span class="string">"time"</span><span class="keyword">)</span> +<span class="symbol">model</span> <span class="assignement"><-</span> <span class="functioncall"><a href='mkinmod.html'>mkinmod</a></span><span class="keyword">(</span> + <span class="argument">parent</span> <span class="argument">=</span> <span class="functioncall"><a href='http://www.rdocumentation.org/packages/base/topics/list'>list</a></span><span class="keyword">(</span><span class="argument">type</span> <span class="argument">=</span> <span class="string">"SFO"</span><span class="keyword">,</span> <span class="argument">to</span> <span class="argument">=</span> <span class="functioncall"><a href='http://www.rdocumentation.org/packages/base/topics/c'>c</a></span><span class="keyword">(</span><span class="string">"A1"</span><span class="keyword">,</span> <span class="string">"B1"</span><span class="keyword">,</span> <span class="string">"C1"</span><span class="keyword">)</span><span class="keyword">,</span> <span class="argument">sink</span> <span class="argument">=</span> <span class="number">FALSE</span><span class="keyword">)</span><span class="keyword">,</span> + <span class="argument">A1</span> <span class="argument">=</span> <span class="functioncall"><a href='http://www.rdocumentation.org/packages/base/topics/list'>list</a></span><span class="keyword">(</span><span class="argument">type</span> <span class="argument">=</span> <span class="string">"SFO"</span><span class="keyword">,</span> <span class="argument">to</span> <span class="argument">=</span> <span class="string">"A2"</span><span class="keyword">)</span><span class="keyword">,</span> + <span class="argument">B1</span> <span class="argument">=</span> <span class="functioncall"><a href='http://www.rdocumentation.org/packages/base/topics/list'>list</a></span><span class="keyword">(</span><span class="argument">type</span> <span class="argument">=</span> <span class="string">"SFO"</span><span class="keyword">)</span><span class="keyword">,</span> + <span class="argument">C1</span> <span class="argument">=</span> <span class="functioncall"><a href='http://www.rdocumentation.org/packages/base/topics/list'>list</a></span><span class="keyword">(</span><span class="argument">type</span> <span class="argument">=</span> <span class="string">"SFO"</span><span class="keyword">)</span><span class="keyword">,</span> + <span class="argument">A2</span> <span class="argument">=</span> <span class="functioncall"><a href='http://www.rdocumentation.org/packages/base/topics/list'>list</a></span><span class="keyword">(</span><span class="argument">type</span> <span class="argument">=</span> <span class="string">"SFO"</span><span class="keyword">)</span><span class="keyword">,</span> <span class="argument">use_of_ff</span> <span class="argument">=</span> <span class="string">"max"</span><span class="keyword">)</span></div> +<strong class='message'>Successfully compiled differential equation model from auto-generated C code.</strong> +<div class='input'><span class="comment">## Not run: mkinfit(model, data, plot=TRUE)</span></div></pre> + </div> + <div class="span4 sidebar"> + <!-- <ul> + <li>schaefer07_complex_case</li><li>schaefer07_complex_results</li> + </ul> + <ul> + <li>datasets</li> + </ul> --> + + + + + </div> +</div> + + <footer> + <p class="pull-right"><a href="#">Back to top</a></p> +<p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. Styled with <a href="https://getbootstrap.com/2.0.4/">bootstrap</a>.</p> + </footer> + </div> + </body> +</html>
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