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Diffstat (limited to 'docs')
| -rw-r--r-- | docs/news/index.html | 4 | ||||
| -rw-r--r-- | docs/pkgdown.yml | 2 | ||||
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| -rw-r--r-- | docs/reference/Rplot002.png | bin | 59394 -> 59381 bytes | |||
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| -rw-r--r-- | docs/reference/mixed-1.png | bin | 219876 -> 220057 bytes | |||
| -rw-r--r-- | docs/reference/mkinmod.html | 4 | ||||
| -rw-r--r-- | docs/reference/mmkin-1.png | bin | 110844 -> 111120 bytes | |||
| -rw-r--r-- | docs/reference/mmkin-2.png | bin | 107612 -> 108016 bytes | |||
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| -rw-r--r-- | docs/reference/mmkin-5.png | bin | 65046 -> 65113 bytes | |||
| -rw-r--r-- | docs/reference/mmkin.html | 4 | ||||
| -rw-r--r-- | docs/reference/nlme-1.png | bin | 70244 -> 68943 bytes | |||
| -rw-r--r-- | docs/reference/nlme-2.png | bin | 94239 -> 94409 bytes | |||
| -rw-r--r-- | docs/reference/nlme.mmkin-1.png | bin | 124827 -> 124937 bytes | |||
| -rw-r--r-- | docs/reference/nlme.mmkin-2.png | bin | 169698 -> 169884 bytes | |||
| -rw-r--r-- | docs/reference/nlme.mmkin-3.png | bin | 172809 -> 172866 bytes | |||
| -rw-r--r-- | docs/reference/plot.mixed.mmkin-1.png | bin | 84976 -> 85300 bytes | |||
| -rw-r--r-- | docs/reference/plot.mixed.mmkin-2.png | bin | 174061 -> 174113 bytes |
23 files changed, 7 insertions, 7 deletions
diff --git a/docs/news/index.html b/docs/news/index.html index 2905c120..0ac20352 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -141,9 +141,9 @@ <small>Source: <a href='https://github.com/jranke/mkin/blob/master/NEWS.md'><code>NEWS.md</code></a></small> </div> - <div id="mkin-104-unreleased" class="section level1"> + <div id="mkin-104-2021-04-20" class="section level1"> <h1 class="page-header" data-toc-text="1.0.4"> -<a href="#mkin-104-unreleased" class="anchor"></a>mkin 1.0.4 (Unreleased)</h1> +<a href="#mkin-104-2021-04-20" class="anchor"></a>mkin 1.0.4 (2021-04-20)</h1> <ul> <li><p>All plotting functions setting graphical parameters: Use on.exit() for resetting graphical parameters</p></li> <li><p>‘plot.mkinfit’: Use xlab and xlim for the residual plot if show_residuals is TRUE</p></li> diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 3f97ea94..554b3bdc 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -10,7 +10,7 @@ articles: web_only/NAFTA_examples: NAFTA_examples.html web_only/benchmarks: benchmarks.html web_only/compiled_models: compiled_models.html -last_built: 2021-04-20T14:34Z +last_built: 2021-07-27T13:38Z urls: reference: https://pkgdown.jrwb.de/mkin/reference article: https://pkgdown.jrwb.de/mkin/articles diff --git a/docs/reference/Rplot001.png b/docs/reference/Rplot001.png Binary files differindex 49fb9af1..22eb54d3 100644 --- a/docs/reference/Rplot001.png +++ b/docs/reference/Rplot001.png diff --git a/docs/reference/Rplot002.png b/docs/reference/Rplot002.png Binary files differindex 745d583d..8512d4f8 100644 --- a/docs/reference/Rplot002.png +++ b/docs/reference/Rplot002.png diff --git a/docs/reference/Rplot003.png b/docs/reference/Rplot003.png Binary files differindex eba202e9..da0a093b 100644 --- a/docs/reference/Rplot003.png +++ b/docs/reference/Rplot003.png diff --git a/docs/reference/Rplot004.png b/docs/reference/Rplot004.png Binary files differindex a4f878c8..31771c20 100644 --- a/docs/reference/Rplot004.png +++ b/docs/reference/Rplot004.png diff --git a/docs/reference/Rplot005.png b/docs/reference/Rplot005.png Binary files differindex a4f878c8..31771c20 100644 --- a/docs/reference/Rplot005.png +++ b/docs/reference/Rplot005.png diff --git a/docs/reference/Rplot006.png b/docs/reference/Rplot006.png Binary files differindex ff8a5d83..4c728f4e 100644 --- a/docs/reference/Rplot006.png +++ b/docs/reference/Rplot006.png diff --git a/docs/reference/mixed-1.png b/docs/reference/mixed-1.png Binary files differindex b9454c86..422ab6a0 100644 --- a/docs/reference/mixed-1.png +++ b/docs/reference/mixed-1.png diff --git a/docs/reference/mkinmod.html b/docs/reference/mkinmod.html index 1e8ad60d..441e573e 100644 --- a/docs/reference/mkinmod.html +++ b/docs/reference/mkinmod.html @@ -348,7 +348,7 @@ Evaluating and Calculating Degradation Kinetics in Environmental Media</p> parent <span class='op'>=</span> <span class='fu'>mkinsub</span><span class='op'>(</span><span class='st'>"SFO"</span>, <span class='st'>"m1"</span>, full_name <span class='op'>=</span> <span class='st'>"Test compound"</span><span class='op'>)</span>, m1 <span class='op'>=</span> <span class='fu'>mkinsub</span><span class='op'>(</span><span class='st'>"SFO"</span>, full_name <span class='op'>=</span> <span class='st'>"Metabolite M1"</span><span class='op'>)</span>, name <span class='op'>=</span> <span class='st'>"SFO_SFO"</span>, dll_dir <span class='op'>=</span> <span class='va'>DLL_dir</span>, unload <span class='op'>=</span> <span class='cn'>TRUE</span>, overwrite <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span> -</div><div class='output co'>#> <span class='message'>Copied DLL from /tmp/Rtmp17EVw2/file269cfd5cc541a9.so to /home/jranke/.local/share/mkin/SFO_SFO.so</span></div><div class='input'><span class='co'># Now we can save the model and restore it in a new session</span> +</div><div class='output co'>#> <span class='message'>Copied DLL from /tmp/RtmpkoTT3P/filecc29e29e1b974.so to /home/jranke/.local/share/mkin/SFO_SFO.so</span></div><div class='input'><span class='co'># Now we can save the model and restore it in a new session</span> <span class='fu'><a href='https://rdrr.io/r/base/readRDS.html'>saveRDS</a></span><span class='op'>(</span><span class='va'>SFO_SFO.2</span>, file <span class='op'>=</span> <span class='st'>"~/SFO_SFO.rds"</span><span class='op'>)</span> <span class='co'># Terminate the R session here if you would like to check, and then do</span> <span class='kw'><a href='https://rdrr.io/r/base/library.html'>library</a></span><span class='op'>(</span><span class='va'><a href='https://pkgdown.jrwb.de/mkin/'>mkin</a></span><span class='op'>)</span> @@ -397,7 +397,7 @@ Evaluating and Calculating Degradation Kinetics in Environmental Media</p> #> }) #> return(predicted) #> } -#> <environment: 0x55555c17ae90></div><div class='input'> +#> <environment: 0x55555a57f6c8></div><div class='input'> <span class='co'># If we have several parallel metabolites</span> <span class='co'># (compare tests/testthat/test_synthetic_data_for_UBA_2014.R)</span> <span class='va'>m_synth_DFOP_par</span> <span class='op'><-</span> <span class='fu'>mkinmod</span><span class='op'>(</span> diff --git a/docs/reference/mmkin-1.png b/docs/reference/mmkin-1.png Binary files differindex f6bb2131..701a6d6a 100644 --- a/docs/reference/mmkin-1.png +++ b/docs/reference/mmkin-1.png diff --git a/docs/reference/mmkin-2.png b/docs/reference/mmkin-2.png Binary files differindex 50102a3d..5277b389 100644 --- a/docs/reference/mmkin-2.png +++ b/docs/reference/mmkin-2.png diff --git a/docs/reference/mmkin-3.png b/docs/reference/mmkin-3.png Binary files differindex 9aa7f0db..2659cd61 100644 --- a/docs/reference/mmkin-3.png +++ b/docs/reference/mmkin-3.png diff --git a/docs/reference/mmkin-4.png b/docs/reference/mmkin-4.png Binary files differindex f4f413d1..ae16ee79 100644 --- a/docs/reference/mmkin-4.png +++ b/docs/reference/mmkin-4.png diff --git a/docs/reference/mmkin-5.png b/docs/reference/mmkin-5.png Binary files differindex 48ab2c50..2b9dc831 100644 --- a/docs/reference/mmkin-5.png +++ b/docs/reference/mmkin-5.png diff --git a/docs/reference/mmkin.html b/docs/reference/mmkin.html index caba300e..d7989c6b 100644 --- a/docs/reference/mmkin.html +++ b/docs/reference/mmkin.html @@ -235,9 +235,9 @@ plotting.</p></div> <span class='va'>time_default</span> </div><div class='output co'>#> user system elapsed -#> 4.656 0.403 1.734 </div><div class='input'><span class='va'>time_1</span> +#> 4.491 0.397 1.634 </div><div class='input'><span class='va'>time_1</span> </div><div class='output co'>#> user system elapsed -#> 5.627 0.004 5.631 </div><div class='input'> +#> 5.491 0.000 5.492 </div><div class='input'> <span class='fu'><a href='endpoints.html'>endpoints</a></span><span class='op'>(</span><span class='va'>fits.0</span><span class='op'>[[</span><span class='st'>"SFO_lin"</span>, <span class='fl'>2</span><span class='op'>]</span><span class='op'>]</span><span class='op'>)</span> </div><div class='output co'>#> $ff #> parent_M1 parent_sink M1_M2 M1_sink diff --git a/docs/reference/nlme-1.png b/docs/reference/nlme-1.png Binary files differindex c41adc27..365aaef0 100644 --- a/docs/reference/nlme-1.png +++ b/docs/reference/nlme-1.png diff --git a/docs/reference/nlme-2.png b/docs/reference/nlme-2.png Binary files differindex c0d8e857..40841404 100644 --- a/docs/reference/nlme-2.png +++ b/docs/reference/nlme-2.png diff --git a/docs/reference/nlme.mmkin-1.png b/docs/reference/nlme.mmkin-1.png Binary files differindex 90ede880..95adfafb 100644 --- a/docs/reference/nlme.mmkin-1.png +++ b/docs/reference/nlme.mmkin-1.png diff --git a/docs/reference/nlme.mmkin-2.png b/docs/reference/nlme.mmkin-2.png Binary files differindex 0d140fd1..53b6fc76 100644 --- a/docs/reference/nlme.mmkin-2.png +++ b/docs/reference/nlme.mmkin-2.png diff --git a/docs/reference/nlme.mmkin-3.png b/docs/reference/nlme.mmkin-3.png Binary files differindex 8a60b52b..e87d15e5 100644 --- a/docs/reference/nlme.mmkin-3.png +++ b/docs/reference/nlme.mmkin-3.png diff --git a/docs/reference/plot.mixed.mmkin-1.png b/docs/reference/plot.mixed.mmkin-1.png Binary files differindex 65660abe..be3c664a 100644 --- a/docs/reference/plot.mixed.mmkin-1.png +++ b/docs/reference/plot.mixed.mmkin-1.png diff --git a/docs/reference/plot.mixed.mmkin-2.png b/docs/reference/plot.mixed.mmkin-2.png Binary files differindex 28168495..933d477b 100644 --- a/docs/reference/plot.mixed.mmkin-2.png +++ b/docs/reference/plot.mixed.mmkin-2.png |
