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-rw-r--r--docs/reference/synthetic_data_for_UBA.html5
-rw-r--r--docs/reference/test_data_from_UBA_2014-16.pngbin14867 -> 23306 bytes
-rw-r--r--docs/reference/test_data_from_UBA_2014-6.pngbin11121 -> 17555 bytes
-rw-r--r--docs/reference/test_data_from_UBA_2014.html4
4 files changed, 4 insertions, 5 deletions
diff --git a/docs/reference/synthetic_data_for_UBA.html b/docs/reference/synthetic_data_for_UBA.html
index 8a148870..f9603f34 100644
--- a/docs/reference/synthetic_data_for_UBA.html
+++ b/docs/reference/synthetic_data_for_UBA.html
@@ -121,9 +121,8 @@
<h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2>
- <p>A list containing datasets in the form internally used by the 'gmkin' package.
- The list has twelve components. Each of the components is one dataset that has,
- among others, the following components</p><dl class='dl-horizontal'>
+ <p>A list containing twelve datasets as an R6 class defined by <code><a href='mkinds.html'>mkinds</a></code>,
+ each containing, among others, the following components</p><dl class='dl-horizontal'>
<dt><code>title</code></dt><dd><p>The name of the dataset, e.g. <code>SFO_lin_a</code></p></dd>
<dt><code>data</code></dt><dd><p>A data frame with the data in the form expected by <code><a href='mkinfit.html'>mkinfit</a></code></p></dd>
</dl>
diff --git a/docs/reference/test_data_from_UBA_2014-16.png b/docs/reference/test_data_from_UBA_2014-16.png
index e5346b43..6738f3a0 100644
--- a/docs/reference/test_data_from_UBA_2014-16.png
+++ b/docs/reference/test_data_from_UBA_2014-16.png
Binary files differ
diff --git a/docs/reference/test_data_from_UBA_2014-6.png b/docs/reference/test_data_from_UBA_2014-6.png
index e7fe4f0c..8c65e604 100644
--- a/docs/reference/test_data_from_UBA_2014-6.png
+++ b/docs/reference/test_data_from_UBA_2014-6.png
Binary files differ
diff --git a/docs/reference/test_data_from_UBA_2014.html b/docs/reference/test_data_from_UBA_2014.html
index 601f148c..e43e2cf9 100644
--- a/docs/reference/test_data_from_UBA_2014.html
+++ b/docs/reference/test_data_from_UBA_2014.html
@@ -232,7 +232,7 @@
#&gt; Model cost at call 380 : 186.8489
#&gt; Model cost at call 382 : 186.8489
#&gt; Model cost at call 383 : 186.8489
-#&gt; Optimisation by method Port successfully terminated.</div><div class='input'> <span class='fu'>plot</span>(<span class='no'>f_river</span>)</div><img src='test_data_from_UBA_2014-6.png' alt='' width='540' height='400' /><div class='input'>
+#&gt; Optimisation by method Port successfully terminated.</div><div class='input'> <span class='fu'><a href='plot.mkinfit.html'>plot_sep</a></span>(<span class='no'>f_river</span>)</div><img src='test_data_from_UBA_2014-6.png' alt='' width='540' height='400' /><div class='input'>
<span class='fu'>summary</span>(<span class='no'>f_river</span>)$<span class='no'>bpar</span></div><div class='output co'>#&gt; Estimate se_notrans t value Pr(&gt;t) Lower
#&gt; parent_w_0 9.598567e+01 2.33959810 4.102657e+01 9.568973e-19 NA
#&gt; k_parent_w_sink 3.603743e-01 0.03497716 1.030313e+01 4.988281e-09 NA
@@ -355,7 +355,7 @@
#&gt; Model cost at call 401 : 37.69197
#&gt; Model cost at call 420 : 37.69197
#&gt; Model cost at call 441 : 37.69197
-#&gt; Optimisation by method Port successfully terminated.</div><div class='input'> <span class='fu'>plot</span>(<span class='no'>f_soil</span>)</div><img src='test_data_from_UBA_2014-16.png' alt='' width='540' height='400' /><div class='input'> <span class='fu'>summary</span>(<span class='no'>f_soil</span>)$<span class='no'>bpar</span></div><div class='output co'>#&gt; Estimate se_notrans t value Pr(&gt;t) Lower
+#&gt; Optimisation by method Port successfully terminated.</div><div class='input'> <span class='fu'><a href='plot.mkinfit.html'>plot_sep</a></span>(<span class='no'>f_soil</span>, <span class='kw'>lpos</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='st'>"topright"</span>, <span class='st'>"topright"</span>, <span class='st'>"topright"</span>, <span class='st'>"bottomright"</span>))</div><img src='test_data_from_UBA_2014-16.png' alt='' width='540' height='400' /><div class='input'> <span class='fu'>summary</span>(<span class='no'>f_soil</span>)$<span class='no'>bpar</span></div><div class='output co'>#&gt; Estimate se_notrans t value Pr(&gt;t) Lower
#&gt; parent_0 76.55425583 0.943443834 81.1434164 4.422340e-30 74.602593306
#&gt; k_parent 0.12081956 0.004815515 25.0896457 1.639665e-18 0.111257526
#&gt; k_M1 0.84258650 0.930121206 0.9058889 1.871937e-01 0.085876305

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