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diff --git a/inst/web/mkinerrmin.html b/inst/web/mkinerrmin.html deleted file mode 100644 index 25179d52..00000000 --- a/inst/web/mkinerrmin.html +++ /dev/null @@ -1,160 +0,0 @@ -<!DOCTYPE html> -<html lang="en"> - <head> - <meta charset="utf-8"> -<title>mkinerrmin. mkin 0.9.44.9000</title> -<meta name="viewport" content="width=device-width, initial-scale=1.0"> -<meta name="author" content=""> - -<link href="css/bootstrap.css" rel="stylesheet"> -<link href="css/bootstrap-responsive.css" rel="stylesheet"> -<link href="css/highlight.css" rel="stylesheet"> -<link href="css/staticdocs.css" rel="stylesheet"> - -<!--[if lt IE 9]> - <script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script> -<![endif]--> - -<script type="text/x-mathjax-config"> - MathJax.Hub.Config({ - tex2jax: { - inlineMath: [ ['$','$'], ["\\(","\\)"] ], - processEscapes: true - } - }); -</script> -<script type="text/javascript" - src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"> -</script> - </head> - - <body> - <div class="navbar"> - <div class="navbar-inner"> - <div class="container"> - <a class="brand" href="#">mkin 0.9.44.9000</a> - <div class="nav"> - <ul class="nav"> - <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> - </ul> - </div> - </div> - </div> -</div> - - <div class="container"> - <header> - - </header> - - <h1> -Calculate the minimum error to assume in order to pass the variance test -</h1> - -<div class="row"> - <div class="span8"> - <h2>Usage</h2> - <pre><div>mkinerrmin(fit, alpha = 0.05)</div></pre> - - <h2>Arguments</h2> - <dl> - <dt>fit</dt> - <dd> - an object of class <code><a href='mkinfit.html'>mkinfit</a></code>. - </dd> - <dt>alpha</dt> - <dd> - The confidence level chosen for the chi-squared test. -</dd> - </dl> - - <div class="Description"> - <h2>Description</h2> - - <p>This function uses <code><a href='http://www.inside-r.org/r-doc/stats/optimize'>optimize</a></code> in order to iteratively find the -smallest relative error still resulting in passing the chi-squared test -as defined in the FOCUS kinetics report from 2006.</p> - - </div> - - <div class="Value"> - <h2>Value</h2> - - <p><dl> - A dataframe with the following components: - <dt>err.min</dt><dd>The relative error, expressed as a fraction.</dd></p> - - <p><dt>n.optim</dt><dd>The number of optimised parameters attributed to the data series.</dd></p> - - <p><dt>df</dt><dd>The number of remaining degrees of freedom for the chi2 error level - calculations. Note that mean values are used for the chi2 statistic and - therefore every time point with observed values in the series only counts - one time.</dd></p> - - <p>The dataframe has one row for the total dataset and one further row for - each observed state variable in the model. -</dl></p> - - </div> - - <div class="Details"> - <h2>Details</h2> - - <p>This function is used internally by <code><a href='summary.mkinfit.html'>summary.mkinfit</a></code>.</p> - - </div> - - <div class="References"> - <h2>References</h2> - - <p>FOCUS (2006) “Guidance Document on Estimating Persistence and - Degradation Kinetics from Environmental Fate Studies on Pesticides in EU - Registration” Report of the FOCUS Work Group on Degradation Kinetics, - EC Document Reference Sanco/10058/2005 version 2.0, 434 pp, - <a href = 'http://focus.jrc.ec.europa.eu/dk'>http://focus.jrc.ec.europa.eu/dk</a></p> - - </div> - - <h2 id="examples">Examples</h2> - <pre class="examples"><div class='input'>SFO_SFO = mkinmod(parent = list(type = "SFO", to = "m1"), - m1 = list(type = "SFO"), - use_of_ff = "max") -</div> -<strong class='message'>Successfully compiled differential equation model from auto-generated C code.</strong> -<div class='input'> -fit_FOCUS_D = mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE) -round(mkinerrmin(fit_FOCUS_D), 4) -</div> -<div class='output'> err.min n.optim df -All data 0.0640 4 15 -parent 0.0646 2 7 -m1 0.0469 2 8 -</div> -<div class='input'>fit_FOCUS_E = mkinfit(SFO_SFO, FOCUS_2006_E, quiet = TRUE) -round(mkinerrmin(fit_FOCUS_E), 4) -</div> -<div class='output'> err.min n.optim df -All data 0.1544 4 13 -parent 0.1659 2 7 -m1 0.1095 2 6 -</div></pre> - </div> - <div class="span4"> - <!-- <ul> - <li>mkinerrmin</li> - </ul> - <ul> - <li> manip </li> - </ul> --> - - - </div> -</div> - - <footer> - <p class="pull-right"><a href="#">Back to top</a></p> -<p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. Styled with <a href="http://twitter.github.com/bootstrap">bootstrap</a>.</p> - </footer> - </div> - </body> -</html>
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