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diff --git a/inst/web/mkinsub.html b/inst/web/mkinsub.html new file mode 100644 index 00000000..94e650ff --- /dev/null +++ b/inst/web/mkinsub.html @@ -0,0 +1,149 @@ +<!DOCTYPE html> +<html lang="en"> + <head> + <meta charset="utf-8"> +<title>mkinsub. mkin 0.9-41</title> +<meta name="viewport" content="width=device-width, initial-scale=1.0"> +<meta name="author" content=" + Johannes Ranke +"> + +<link href="css/bootstrap.css" rel="stylesheet"> +<link href="css/bootstrap-responsive.css" rel="stylesheet"> +<link href="css/highlight.css" rel="stylesheet"> +<link href="css/staticdocs.css" rel="stylesheet"> + +<!--[if lt IE 9]> + <script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script> +<![endif]--> + +<script type="text/x-mathjax-config"> + MathJax.Hub.Config({ + tex2jax: { + inlineMath: [ ['$','$'], ["\\(","\\)"] ], + processEscapes: true + } + }); +</script> +<script type="text/javascript" + src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"> +</script> + </head> + + <body> + <div class="navbar"> + <div class="navbar-inner"> + <div class="container"> + <a class="brand" href="#">mkin 0.9-41</a> + <div class="nav"> + <ul class="nav"> + <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> + </ul> + </div> + </div> + </div> +</div> + + <div class="container"> + <header> + + </header> + + <h1> + Function to set up a kinetic submodel for one state variable +</h1> + +<div class="row"> + <div class="span8"> + <h2>Usage</h2> + <pre><div>mkinsub(submodel, to = NULL, sink = TRUE, full_name = NA)</div></pre> + + <h2>Arguments</h2> + <dl> + <dt>submodel</dt> + <dd> + Character vector of length one to specify the submodel type. See + <code><a href='mkinmod.html'>mkinmod</a></code> for the list of allowed submodel names. + </dd> + <dt>to</dt> + <dd> + Vector of the names of the state variable to which a transformation + shall be included in the model. + </dd> + <dt>sink</dt> + <dd> + Should a pathway to sink be included in the model in addition to the + pathways to other state variables? + </dd> + <dt>full_name</dt> + <dd> + An optional name to be used e.g. for plotting fits performed with the model. + You can use non-ASCII characters here, but then your R code will not be + portable, <em>i.e.</em> may produce unintended plot results on other + operating systems or system configurations. + </dd> + </dl> + + <div class="Description"> + <h2>Description</h2> + + <p>This is a convenience function to set up the lists used as arguments for + <code><a href='mkinmod.html'>mkinmod</a></code>.</p> + + </div> + + <div class="Value"> + <h2>Value</h2> + + <p><dl> + A list for use with <code><a href='mkinmod.html'>mkinmod</a></code>. +</dl></p> + + </div> + + <h2 id="examples">Examples</h2> + <pre class="examples"><div class='input'># One parent compound, one metabolite, both single first order. +SFO_SFO <- mkinmod( + parent = list(type = "SFO", to = "m1"), + m1 = list(type = "SFO")) +</div> +<strong class='message'>Successfully compiled differential equation model from auto-generated C code.</strong> +<div class='input'> +# The same model using mkinsub +SFO_SFO.2 <- mkinmod( + parent = mkinsub("SFO", "m1"), + m1 = mkinsub("SFO")) +</div> +<strong class='message'>Successfully compiled differential equation model from auto-generated C code.</strong> +<div class='input'> +# Now supplying full names +SFO_SFO.2 <- mkinmod( + parent = mkinsub("SFO", "m1", full_name = "Test compound"), + m1 = mkinsub("SFO", full_name = "Metabolite M1")) +</div> +<strong class='message'>Successfully compiled differential equation model from auto-generated C code.</strong></pre> + </div> + <div class="span4"> + <!-- <ul> + <li>mkinsub</li> + </ul> + <ul> + + </ul> --> + + + <h2>Author</h2> + + Johannes Ranke + + + </div> +</div> + + <footer> + <p class="pull-right"><a href="#">Back to top</a></p> +<p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. Styled with <a href="http://twitter.github.com/bootstrap">bootstrap</a>.</p> + </footer> + </div> + </body> +</html>
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