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diff --git a/inst/web/schaefer07_complex_case.html b/inst/web/schaefer07_complex_case.html deleted file mode 100644 index b6d0528a..00000000 --- a/inst/web/schaefer07_complex_case.html +++ /dev/null @@ -1,132 +0,0 @@ -<!DOCTYPE html> -<html lang="en"> - <head> - <meta charset="utf-8"> -<title>schaefer07_complex_case. mkin 0.9.44.9000</title> -<meta name="viewport" content="width=device-width, initial-scale=1.0"> -<meta name="author" content=""> - -<link href="css/bootstrap.css" rel="stylesheet"> -<link href="css/bootstrap-responsive.css" rel="stylesheet"> -<link href="css/highlight.css" rel="stylesheet"> -<link href="css/staticdocs.css" rel="stylesheet"> - -<!--[if lt IE 9]> - <script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script> -<![endif]--> - -<script type="text/x-mathjax-config"> - MathJax.Hub.Config({ - tex2jax: { - inlineMath: [ ['$','$'], ["\\(","\\)"] ], - processEscapes: true - } - }); -</script> -<script type="text/javascript" - src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"> -</script> - </head> - - <body> - <div class="navbar"> - <div class="navbar-inner"> - <div class="container"> - <a class="brand" href="#">mkin 0.9.44.9000</a> - <div class="nav"> - <ul class="nav"> - <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> - </ul> - </div> - </div> - </div> -</div> - - <div class="container"> - <header> - - </header> - - <h1> - Metabolism data set used for checking the software quality of KinGUI -</h1> - -<div class="row"> - <div class="span8"> - <h2>Usage</h2> - <pre><div>data(schaefer07_complex_case)</div></pre> - - <div class="Description"> - <h2>Description</h2> - - <p>This dataset was used for a comparison of KinGUI and ModelMaker to check the - software quality of KinGUI in the original publication (Schäfer et al., 2007). - The results from the fitting are also included.</p> - - </div> - - <div class="Format"> - <h2>Format</h2> - - <p>The data set is a data frame with 8 observations on the following 6 variables. - <dl> - <dt><code>time</code></dt><dd>a numeric vector</dd></p> - - <p><dt><code>parent</code></dt><dd>a numeric vector</dd></p> - - <p><dt><code>A1</code></dt><dd>a numeric vector</dd></p> - - <p><dt><code>B1</code></dt><dd>a numeric vector</dd></p> - - <p><dt><code>C1</code></dt><dd>a numeric vector</dd></p> - - <p><dt><code>A2</code></dt><dd>a numeric vector</dd></p> - - <p></dl></p> - - <p>The results are a data frame with 14 results for different parameter values</p> - - </div> - - <div class="References"> - <h2>References</h2> - - <p>Schäfer D, Mikolasch B, Rainbird P and Harvey B (2007). KinGUI: a new kinetic - software tool for evaluations according to FOCUS degradation kinetics. In: Del - Re AAM, Capri E, Fragoulis G and Trevisan M (Eds.). Proceedings of the XIII - Symposium Pesticide Chemistry, Piacenza, 2007, p. 916-923.</p> - - </div> - - <h2 id="examples">Examples</h2> - <pre class="examples"><div class='input'>data <- mkin_wide_to_long(schaefer07_complex_case, time = "time") -model <- mkinmod( - parent = list(type = "SFO", to = c("A1", "B1", "C1"), sink = FALSE), - A1 = list(type = "SFO", to = "A2"), - B1 = list(type = "SFO"), - C1 = list(type = "SFO"), - A2 = list(type = "SFO"), use_of_ff = "max") -</div> -<strong class='message'>Successfully compiled differential equation model from auto-generated C code.</strong> -<div class='input'>## Not run: mkinfit(model, data, plot=TRUE) -</div></pre> - </div> - <div class="span4"> - <!-- <ul> - <li>schaefer07_complex_case</li><li>schaefer07_complex_results</li> - </ul> - <ul> - <li>datasets</li> - </ul> --> - - - </div> -</div> - - <footer> - <p class="pull-right"><a href="#">Back to top</a></p> -<p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. Styled with <a href="http://twitter.github.com/bootstrap">bootstrap</a>.</p> - </footer> - </div> - </body> -</html>
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