diff options
Diffstat (limited to 'inst')
| -rw-r--r-- | inst/dataset_generation/D24_2014.R | 71 | ||||
| -rw-r--r-- | inst/dataset_generation/focus_soil_moisture.R | 11 |
2 files changed, 82 insertions, 0 deletions
diff --git a/inst/dataset_generation/D24_2014.R b/inst/dataset_generation/D24_2014.R new file mode 100644 index 00000000..bea74da5 --- /dev/null +++ b/inst/dataset_generation/D24_2014.R @@ -0,0 +1,71 @@ +# From the Addendum to the RAR 2014, see the help file for D24_2014 +# Soil characterisation from EFSA conclusion 2014 +D24_2014 <- mkindsg$new( + title = "Aerobic soil degradation data on 2,4-D from the EU assessment in 2014", + ds = list( + mkinds$new("Mississippi", + data.frame( + name = "D24", + time = c(0, 2, 4, 7, 15, 24, 35, 56, 71, 114, 183, 273, 365), + value = c(96.8, 81.0, 81.7, 88.2, 66.3, 72.9, 62.6, 54.6, 35.2, 18.0, + 11.3, 9.9, 6.3)) + ), + mkinds$new("Fayette", + mkin_wide_to_long( + data.frame( + t = rep(c(0, 0.1, 0.3, 1, 3, 5, 10, 17, 26), each = 2), + D24 = c(96.9, 96.6, 93.2, 93.2, 90.5, 91.5, 86.3, 87.1, 79.0, 80.8, + 74.0, 65.6, 35.0, 36.7, 6.6, 4.5, 1.6, 1.7), + DCP = c(NA, NA, 1.4, 1.6, 2.5, 2.4, 2.9, 3.1, 4.4, 4.2, 5.8, 5.4, + 8.2, 8.7, 5.8, 3.8, 1.8, 2.0), + DCA = c(rep(NA, 10), 3.2, 3.5, 9.5, 9.1, 15.0, 13.0, 11.8, 11.7)) + ) + ), + mkinds$new("RefSol 03-G", + mkin_wide_to_long( + data.frame( + t = rep(c(0, 0.1, 0.3, 1, 3, 5, 10, 17, 26), each = 2), + D24 = c(92.9, 93.1, 87.4, 87.9, 78.1, 78.8, 57.1, 56.1, 25.0, 32.3, + 14.7, NA, 3.1, 3.1, 2.7, 2.1, 2.0, 2.2), + DCP = c(NA, NA, 2.8, 2.5, 5.5, 5.4, 8.5, 8.6, 6.7, 5.3, 5.7, NA, + 3.2, 2.7, 2.3, 1.7, 1.3, 1.7), + DCA = c(rep(NA, 6), 3.3, 3.7, 8.0, 7.0, 10.6, NA, 7.7, 7.9, 5.2, + 6.7, 4.6, 4.2)) + ) + ), + mkinds$new("Site E1", + mkin_wide_to_long( + data.frame( + t = rep(c(0, 0.1, 0.3, 1, 3, 7, 10, 17, 26), each = 2), + D24 = c(97.5, 97.9, 97.9, 98.3, 92.4, 91.9, 65.8, 69.5, 37.5, + 40, 18.8, 14.4, 3.3, 5.7, 2.6, 2.3, 2.4, 2), + DCP = c(rep(NA, 4), 1.8, 2.3, 4.4, 3.6, 4.8, 4.3, 3.3, 3.7, + 1.7, 2.3, NA, 0.8, 0.8, 0.8), + DCA = c(rep(NA, 6), 3.9, 2.9, 6.3, 5.4, 5.7, 5.5, 4.5, 4.2, + 3.0, 2.5, 1.5, 1.7)) + ) + ), + mkinds$new("Site I2", + mkin_wide_to_long( + data.frame( + t = rep(c(0, 0.1, 0.3, 1, 3, 5, 10, 17, 26), each = 2), + D24 = c(94.1, 91.6, 90.1, 89.2, 86.3, 86.5, 76.7, 74.7, + 33.1, NA, 8.8, 6.7, 3.1, 3.2, 1.6, 1.7, 1.5, 1.9), + DCP = c(NA, NA, 0.9, 1.2, 1.7, 1.3, 2.5, 5.1, 2.5, NA, + 1.9, 1.7, 0.5, 0.9, 0.9, 1.2, 0.7, NA), + DCA = c(rep(NA, 8), 4.5, NA, 6.6, 5.7, 5.1, 4.3, 2.3, 2.2, + 2.1, 2.1)) + ) + ) + ), + meta = data.frame( + study = c("Cohen 1991", rep("Liu and Adelfinskaya 2011", 4)), + usda_soil_type = c("Silt loam", # p. 683 + "Clay loam", "Clay loam", "Sandy loam", "Sandy loam"), # EFSA 204 p. 41/42 + moisture_ref_type = c(NA, rep("% MWHC", 4)), # p. 687 + rel_moisture = c(NA, 0.5, 0.5, 0.5, 0.5), # p. 687 + moisture_ref = c(NA, 65.7, 59.9, 75.3, 48.5), # p. 687 + temperature = c(25, 20, 20, 20, 20) + ) +) +#save(D24_2014, file = "../../data/D24_2014.rda", version = 2) diff --git a/inst/dataset_generation/focus_soil_moisture.R b/inst/dataset_generation/focus_soil_moisture.R new file mode 100644 index 00000000..bfabc29a --- /dev/null +++ b/inst/dataset_generation/focus_soil_moisture.R @@ -0,0 +1,11 @@ +# FOCUS Generic GW 2014, p. 36 +focus_soil_moisture <- as.matrix( + data.frame( + usda_soil_type = c("Sand", "Loamy sand", "Sandy loam", "Sandy clay loam", + "Clay loam", "Loam", "Silt loam", "Silty clay loam", "Silt", + "Sandy clay", "Silty clay", "Clay"), + pF1 = c(24, 24, 27, 28, 32, 31, 32, 34, 31, 41, 44, 53), + pF2 = c(12, 14, 19, 22, 28, 25, 26, 30, 27, 35, 40, 48), + pF2.5 = c(7, 9, 15, 18, 25, 21, 21, 27, 21, 31, 36, 43), + row.names = "usda_soil_type")) +#save(focus_soil_moisture, file = "../../data/focus_soil_moisture.rda", version = 2) |