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diff --git a/log/test.log b/log/test.log new file mode 100644 index 00000000..0e2ca6b2 --- /dev/null +++ b/log/test.log @@ -0,0 +1,57 @@ +ℹ Testing mkin +✔ | F W S OK | Context +✔ | 5 | AIC calculation +✔ | 5 | Analytical solutions for coupled models [3.4s] +✔ | 5 | Calculation of Akaike weights +✔ | 3 | Export dataset for reading into CAKE +✔ | 12 | Confidence intervals and p-values [1.0s] +✔ | 1 12 | Dimethenamid data from 2018 [63.1s] +──────────────────────────────────────────────────────────────────────────────── +Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data +Reason: Fitting this ODE model with saemix takes about 15 minutes on my system +──────────────────────────────────────────────────────────────────────────────── +✔ | 14 | Error model fitting [5.5s] +✔ | 5 | Time step normalisation +✔ | 4 | Calculation of FOCUS chi2 error levels [0.6s] +✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s] +✔ | 4 | Test fitting the decline of metabolites from their maximum [0.4s] +✔ | 1 | Fitting the logistic model [0.2s] +✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [28.6s] +✔ | 1 12 | Nonlinear mixed-effects models [0.6s] +──────────────────────────────────────────────────────────────────────────────── +Skip (test_mixed.R:74:3): saemix results are reproducible for biphasic fits +Reason: Fitting with saemix takes around 10 minutes when using deSolve +──────────────────────────────────────────────────────────────────────────────── +✔ | 3 | Test dataset classes mkinds and mkindsg +✔ | 10 | Special cases of mkinfit calls [1.1s] +✔ | 3 | mkinfit features [1.7s] +✔ | 8 | mkinmod model generation and printing [0.4s] +✔ | 3 | Model predictions with mkinpredict [0.6s] +✔ | 7 | Multistart method for saem.mmkin models [93.9s] +✔ | 16 | Evaluations according to 2015 NAFTA guidance [7.0s] +✔ | 9 | Nonlinear mixed-effects models with nlme [13.0s] +✔ | 16 | Plotting [11.3s] +✔ | 4 | Residuals extracted from mkinfit models +✔ | 1 36 | saemix parent models [72.6s] +──────────────────────────────────────────────────────────────────────────────── +Skip (test_saemix_parent.R:152:3): We can also use mkin solution methods for saem +Reason: This still takes almost 2.5 minutes although we do not solve ODEs +──────────────────────────────────────────────────────────────────────────────── +✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4s] +✔ | 11 | Processing of residue series +✔ | 7 | Fitting the SFORB model [3.7s] +✔ | 1 | Summaries of old mkinfit objects +✔ | 5 | Summary [0.2s] +✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2s] +✔ | 9 | Hypothesis tests [8.1s] +✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s] + +══ Results ═════════════════════════════════════════════════════════════════════ +Duration: 324.3 s + +── Skipped tests ────────────────────────────────────────────────────────────── +• Fitting this ODE model with saemix takes about 15 minutes on my system (1) +• Fitting with saemix takes around 10 minutes when using deSolve (1) +• This still takes almost 2.5 minutes although we do not solve ODEs (1) + +[ FAIL 0 | WARN 0 | SKIP 3 | PASS 261 ] |