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-rw-r--r--log/build.log2
-rw-r--r--log/check.log14
-rw-r--r--log/test.log29
3 files changed, 23 insertions, 22 deletions
diff --git a/log/build.log b/log/build.log
index c2001830..de7e4488 100644
--- a/log/build.log
+++ b/log/build.log
@@ -7,5 +7,5 @@
* checking for empty or unneeded directories
Removed empty directory ‘mkin/inst/rmarkdown/templates/hierarchical_kinetics_parent’
Removed empty directory ‘mkin/vignettes/web_only’
-* building ‘mkin_1.2.8.tar.gz’
+* building ‘mkin_1.2.9.tar.gz’
diff --git a/log/check.log b/log/check.log
index 5e777a87..58615282 100644
--- a/log/check.log
+++ b/log/check.log
@@ -1,6 +1,6 @@
* using log directory ‘/home/jranke/git/mkin/mkin.Rcheck’
-* using R version 4.3.2 (2023-10-31)
-* using platform: x86_64-pc-linux-gnu (64-bit)
+* using R version 4.4.0 (2024-04-24)
+* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Debian 12.2.0-14) 12.2.0
GNU Fortran (Debian 12.2.0-14) 12.2.0
@@ -9,9 +9,9 @@
* using options ‘--no-tests --as-cran’
* checking for file ‘mkin/DESCRIPTION’ ... OK
* checking extension type ... Package
-* this is package ‘mkin’ version ‘1.2.8’
+* this is package ‘mkin’ version ‘1.2.9’
* package encoding: UTF-8
-* checking CRAN incoming feasibility ... [2s/14s] Note_to_CRAN_maintainers
+* checking CRAN incoming feasibility ... Note_to_CRAN_maintainers
Maintainer: ‘Johannes Ranke <johannes.ranke@jrwb.de>’
* checking package namespace information ... OK
* checking package dependencies ... OK
@@ -32,7 +32,7 @@ Maintainer: ‘Johannes Ranke <johannes.ranke@jrwb.de>’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
-* checking R files for non-ASCII characters ... OK
+* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
@@ -62,11 +62,11 @@ Maintainer: ‘Johannes Ranke <johannes.ranke@jrwb.de>’
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
-* checking examples ... OK
+* checking examples ... [10s/10s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... SKIPPED
* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
+* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
diff --git a/log/test.log b/log/test.log
index 9dc63675..e92a7409 100644
--- a/log/test.log
+++ b/log/test.log
@@ -4,39 +4,40 @@
✔ | 5 | Analytical solutions for coupled models [1.5s]
✔ | 5 | Calculation of Akaike weights
✔ | 3 | Export dataset for reading into CAKE
-✔ | 6 | Use of precompiled symbols in mkinpredict [3.2s]
+✔ | 6 | Use of precompiled symbols in mkinpredict [3.1s]
✔ | 12 | Confidence intervals and p-values
-✔ | 1 12 | Dimethenamid data from 2018 [13.8s]
-✔ | 14 | Error model fitting [2.5s]
+✔ | 1 12 | Dimethenamid data from 2018 [13.0s]
+✔ | 14 | Error model fitting [2.6s]
✔ | 5 | Time step normalisation
✔ | 4 | Calculation of FOCUS chi2 error levels
✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014)
✔ | 4 | Test fitting the decline of metabolites from their maximum
✔ | 1 | Fitting the logistic model
-✔ | 10 | Batch fitting and diagnosing hierarchical kinetic models [19.8s]
-✔ | 2 16 | Nonlinear mixed-effects models [149.6s]
+✔ | 10 | Batch fitting and diagnosing hierarchical kinetic models [19.7s]
+✔ | 2 16 | Nonlinear mixed-effects models [144.7s]
✔ | 3 | Test dataset classes mkinds and mkindsg
✔ | 10 | Special cases of mkinfit calls
✔ | 3 | mkinfit features
✔ | 8 | mkinmod model generation and printing
✔ | 3 | Model predictions with mkinpredict
-✔ | 12 | Multistart method for saem.mmkin models [23.6s]
-✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.6s]
-✔ | 9 | Nonlinear mixed-effects models with nlme [4.0s]
-✔ | 15 | Plotting [4.7s]
+✔ | 12 | Multistart method for saem.mmkin models [23.3s]
+✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.5s]
+✔ | 9 | Nonlinear mixed-effects models with nlme [3.7s]
+✔ | 15 | Plotting [4.5s]
✔ | 4 | Residuals extracted from mkinfit models
-✔ | 1 38 | saemix parent models [36.4s]
+✔ | 1 38 | saemix parent models [34.8s]
✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper
✔ | 11 | Processing of residue series
-✔ | 10 | Fitting the SFORB model [1.8s]
+✔ | 10 | Fitting the SFORB model [1.7s]
✔ | 1 | Summaries of old mkinfit objects
✔ | 5 | Summary
✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014)
-✔ | 9 | Hypothesis tests [3.1s]
+✔ | 9 | Hypothesis tests [2.9s]
✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs)
+✔ | 2 | water-sediment
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 270.7 s
+Duration: 262.3 s
── Skipped tests (4) ───────────────────────────────────────────────────────────
• Fitting this ODE model with saemix takes about 5 minutes on my new system
@@ -47,4 +48,4 @@ Duration: 270.7 s
• This still takes almost 2.5 minutes although we do not solve ODEs (1):
'test_saemix_parent.R:143:3'
-[ FAIL 0 | WARN 0 | SKIP 4 | PASS 283 ]
+[ FAIL 0 | WARN 0 | SKIP 4 | PASS 285 ]

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