diff options
Diffstat (limited to 'log')
| -rw-r--r-- | log/check.log | 13 | ||||
| -rw-r--r-- | log/test.log | 35 |
2 files changed, 24 insertions, 24 deletions
diff --git a/log/check.log b/log/check.log index b44bc1b4..f7a0d87e 100644 --- a/log/check.log +++ b/log/check.log @@ -7,12 +7,12 @@ * checking extension type ... Package * this is package ‘mkin’ version ‘1.2.3’ * package encoding: UTF-8 -* checking CRAN incoming feasibility ... NOTE +* checking CRAN incoming feasibility ... Note_to_CRAN_maintainers Maintainer: ‘Johannes Ranke <johannes.ranke@jrwb.de>’ - -The Date field is over a month old. * checking package namespace information ... OK -* checking package dependencies ... OK +* checking package dependencies ...Warning: unable to access index for repository https://cran.rstudio.com/src/contrib: + cannot open URL 'https://cran.rstudio.com/src/contrib/PACKAGES' + OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK @@ -23,7 +23,8 @@ The Date field is over a month old. * checking whether package ‘mkin’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK -* checking for future file timestamps ... OK +* checking for future file timestamps ... NOTE +unable to verify current time * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK @@ -65,7 +66,7 @@ The Date field is over a month old. * checking tests ... SKIPPED * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK -* checking re-building of vignette outputs ... [12s/12s] OK +* checking re-building of vignette outputs ... [11s/11s] OK * checking PDF version of manual ... OK * skipping checking HTML version of manual: no command ‘tidy’ found * checking for non-standard things in the check directory ... OK diff --git a/log/test.log b/log/test.log index d4fb85a2..d3939c0f 100644 --- a/log/test.log +++ b/log/test.log @@ -1,14 +1,13 @@ -ℹ Loading mkin ℹ Testing mkin ✔ | F W S OK | Context ✔ | 5 | AIC calculation ✔ | 5 | Analytical solutions for coupled models [2.8s] ✔ | 5 | Calculation of Akaike weights ✔ | 3 | Export dataset for reading into CAKE -✔ | 12 | Confidence intervals and p-values [1.0s] -✔ | 1 12 | Dimethenamid data from 2018 [31.3s] +✔ | 12 | Confidence intervals and p-values [0.9s] +✔ | 1 12 | Dimethenamid data from 2018 [30.7s] ──────────────────────────────────────────────────────────────────────────────── -Skip ('test_dmta.R:99'): Different backends get consistent results for SFO-SFO3+, dimethenamid data +Skip ('test_dmta.R:99:3'): Different backends get consistent results for SFO-SFO3+, dimethenamid data Reason: Fitting this ODE model with saemix takes about 15 minutes on my system ──────────────────────────────────────────────────────────────────────────────── ✔ | 14 | Error model fitting [6.9s] @@ -18,9 +17,9 @@ Reason: Fitting this ODE model with saemix takes about 15 minutes on my system ✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3s] ✔ | 1 | Fitting the logistic model [0.2s] ✔ | 10 | Batch fitting and diagnosing hierarchical kinetic models [42.7s] -✔ | 1 11 | Nonlinear mixed-effects models [13.1s] +✔ | 1 11 | Nonlinear mixed-effects models [13.3s] ──────────────────────────────────────────────────────────────────────────────── -Skip ('test_mixed.R:78'): saemix results are reproducible for biphasic fits +Skip ('test_mixed.R:78:3'): saemix results are reproducible for biphasic fits Reason: Fitting with saemix takes around 10 minutes when using deSolve ──────────────────────────────────────────────────────────────────────────────── ✔ | 3 | Test dataset classes mkinds and mkindsg @@ -28,27 +27,27 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve ✔ | 3 | mkinfit features [0.6s] ✔ | 8 | mkinmod model generation and printing [0.2s] ✔ | 3 | Model predictions with mkinpredict [0.3s] -✔ | 12 | Multistart method for saem.mmkin models [74.1s] -✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.9s] -✔ | 9 | Nonlinear mixed-effects models with nlme [8.5s] -✔ | 15 | Plotting [11.4s] +✔ | 12 | Multistart method for saem.mmkin models [73.3s] +✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.0s] +✔ | 9 | Nonlinear mixed-effects models with nlme [1107.1s] +✔ | 15 | Plotting [13.3s] ✔ | 4 | Residuals extracted from mkinfit models -✔ | 1 36 | saemix parent models [73.9s] +✔ | 1 36 | saemix parent models [74.8s] ──────────────────────────────────────────────────────────────────────────────── -Skip ('test_saemix_parent.R:143'): We can also use mkin solution methods for saem +Skip ('test_saemix_parent.R:143:3'): We can also use mkin solution methods for saem Reason: This still takes almost 2.5 minutes although we do not solve ODEs ──────────────────────────────────────────────────────────────────────────────── -✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.1s] +✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5s] ✔ | 11 | Processing of residue series -✔ | 10 | Fitting the SFORB model [3.1s] +✔ | 10 | Fitting the SFORB model [3.3s] ✔ | 1 | Summaries of old mkinfit objects ✔ | 5 | Summary [0.1s] -✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [1.7s] -✔ | 9 | Hypothesis tests [6.0s] -✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [1.9s] +✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [1.8s] +✔ | 9 | Hypothesis tests [6.1s] +✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [1.8s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 285.4 s +Duration: 1386.7 s ── Skipped tests ────────────────────────────────────────────────────────────── • Fitting this ODE model with saemix takes about 15 minutes on my system (1) |