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-rw-r--r--log/build.log2
-rw-r--r--log/test.log36
2 files changed, 19 insertions, 19 deletions
diff --git a/log/build.log b/log/build.log
index 5ac21b0d..c4f9b8a2 100644
--- a/log/build.log
+++ b/log/build.log
@@ -5,5 +5,5 @@
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
-* building ‘mkin_1.1.2.tar.gz’
+* building ‘mkin_1.2.0.tar.gz’
diff --git a/log/test.log b/log/test.log
index 0e2ca6b2..b4298c40 100644
--- a/log/test.log
+++ b/log/test.log
@@ -1,38 +1,38 @@
ℹ Testing mkin
✔ | F W S OK | Context
✔ | 5 | AIC calculation
-✔ | 5 | Analytical solutions for coupled models [3.4s]
+✔ | 5 | Analytical solutions for coupled models [3.3s]
✔ | 5 | Calculation of Akaike weights
✔ | 3 | Export dataset for reading into CAKE
✔ | 12 | Confidence intervals and p-values [1.0s]
-✔ | 1 12 | Dimethenamid data from 2018 [63.1s]
+✔ | 1 12 | Dimethenamid data from 2018 [31.7s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data
Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
────────────────────────────────────────────────────────────────────────────────
-✔ | 14 | Error model fitting [5.5s]
+✔ | 14 | Error model fitting [5.0s]
✔ | 5 | Time step normalisation
✔ | 4 | Calculation of FOCUS chi2 error levels [0.6s]
✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s]
-✔ | 4 | Test fitting the decline of metabolites from their maximum [0.4s]
+✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3s]
✔ | 1 | Fitting the logistic model [0.2s]
-✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [28.6s]
-✔ | 1 12 | Nonlinear mixed-effects models [0.6s]
+✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.4s]
+✔ | 1 12 | Nonlinear mixed-effects models [0.3s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_mixed.R:74:3): saemix results are reproducible for biphasic fits
Reason: Fitting with saemix takes around 10 minutes when using deSolve
────────────────────────────────────────────────────────────────────────────────
✔ | 3 | Test dataset classes mkinds and mkindsg
-✔ | 10 | Special cases of mkinfit calls [1.1s]
-✔ | 3 | mkinfit features [1.7s]
-✔ | 8 | mkinmod model generation and printing [0.4s]
-✔ | 3 | Model predictions with mkinpredict [0.6s]
-✔ | 7 | Multistart method for saem.mmkin models [93.9s]
-✔ | 16 | Evaluations according to 2015 NAFTA guidance [7.0s]
-✔ | 9 | Nonlinear mixed-effects models with nlme [13.0s]
-✔ | 16 | Plotting [11.3s]
+✔ | 10 | Special cases of mkinfit calls [0.4s]
+✔ | 3 | mkinfit features [0.7s]
+✔ | 8 | mkinmod model generation and printing [0.2s]
+✔ | 3 | Model predictions with mkinpredict [0.3s]
+✔ | 7 | Multistart method for saem.mmkin models [38.1s]
+✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.4s]
+✔ | 9 | Nonlinear mixed-effects models with nlme [8.6s]
+✔ | 16 | Plotting [9.8s]
✔ | 4 | Residuals extracted from mkinfit models
-✔ | 1 36 | saemix parent models [72.6s]
+✔ | 1 36 | saemix parent models [72.0s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_saemix_parent.R:152:3): We can also use mkin solution methods for saem
Reason: This still takes almost 2.5 minutes although we do not solve ODEs
@@ -43,11 +43,11 @@ Reason: This still takes almost 2.5 minutes although we do not solve ODEs
✔ | 1 | Summaries of old mkinfit objects
✔ | 5 | Summary [0.2s]
✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2s]
-✔ | 9 | Hypothesis tests [8.1s]
-✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s]
+✔ | 9 | Hypothesis tests [8.3s]
+✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.1s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 324.3 s
+Duration: 208.6 s
── Skipped tests ──────────────────────────────────────────────────────────────
• Fitting this ODE model with saemix takes about 15 minutes on my system (1)

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