diff options
Diffstat (limited to 'man/mkinfit.Rd')
| -rw-r--r-- | man/mkinfit.Rd | 18 |
1 files changed, 14 insertions, 4 deletions
diff --git a/man/mkinfit.Rd b/man/mkinfit.Rd index bd7f73b7..c99e146c 100644 --- a/man/mkinfit.Rd +++ b/man/mkinfit.Rd @@ -21,7 +21,8 @@ mkinfit(mkinmod, observed, fixed_parms = NULL, fixed_initials = names(mkinmod$diffs)[-1], solution_type = "auto", method.ode = "lsoda", - method.modFit = "Marq", + method.modFit = c("Marq", "Port", "SANN", "Nelder-Mead", "BFSG", "CG", "L-BFGS-B"), + maxit.modFit = "auto", control.modFit = list(), transform_rates = TRUE, transform_fractions = TRUE, @@ -102,12 +103,21 @@ mkinfit(mkinmod, observed, recommended as it is less prone to get trapped in local minima and depends less on starting values for parameters. However, it needs more iterations. - When using "Pseudo", "upper" and "lower" need to be specified for the - transformed parameters. + The "Pseudo" algorithm is not included because it needs finite parameter bounds + which are currently not supported. + + The "Newton" algorithm is not included because its number of iterations + can not be controlled by \code{control.modFit} and it does not appear + to provide advantages over the other algorithms. + } + \item{maxit.modFit}{ + Maximum number of iterations in the optimisation. If not "auto", this will + be passed to the method called by \code{\link{modFit}}, overriding + what may be specified in the next argument \code{control.modFit}. } \item{control.modFit}{ Additional arguments passed to the optimisation method used by - \code{\link{modFit}}. + \code{\link{modFit}}. } \item{transform_rates}{ Boolean specifying if kinetic rate constants should be transformed in the |