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diff --git a/man/mkinmod.Rd b/man/mkinmod.Rd new file mode 100644 index 00000000..4569b317 --- /dev/null +++ b/man/mkinmod.Rd @@ -0,0 +1,44 @@ +\name{mkinmod}
+\alias{mkinmod}
+\title{
+ Function to set up a kinetic model with one or more state variables.
+}
+\description{
+ The function takes a specification, consisting of a list of the observed variables
+ in the data. Each observed variable is again represented by a list, specifying the
+ kinetic model type and reaction or transfer to other observed compartments.
+}
+\usage{
+mkinmod(spec = list(parent = list(type = "SFO", to = NA, sink = TRUE)))
+}
+\arguments{
+ \item{spec}{
+ A list of observed variables to be modelled. Each observed variable has to be
+ represented by a list with the following entries:
+ \code{type}{ The type of kinetics to use for the variable. Currently, only
+ single first order kinetics "SFO" or single first order with reversible binding
+ "SFORB" are implemented. }
+ \code{to}{ A vector of names of variables to which a transfer is to be assumed
+ in the model. }
+ \code{sink}{ Boolean, specifying if transformation to unspecified compounds (sink)
+ is to be assumed in the model. }
+ }
+}
+\value{
+ A list of class \code{mkinmod} for use with \code{\link{mkinfit}}, containing
+ \item{diffs}{ A vector of string representations of differential equations,
+ one for each modelling variable. }
+ \item{parms}{ A vector of parameter names occurring in the differential equations. }
+ \item{map}{ A list containing named character vectors for each observed variable, specifying
+ the modelling variables by which it is represented. }
+}
+\author{
+ Johannes Ranke <jranke@{harlan.com,uni-bremen.de}>
+}
+\examples{
+# One parent compound, one metabolite, both single first order.
+SFO_SFO <- mkinmod(spec = list(
+ parent = list(type = "SFO", to = "m1", sink = TRUE),
+ m1 = list(type = "SFO", to = NA, sink = TRUE)))
+}
+\keyword{ models }
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