diff options
Diffstat (limited to 'man/nlmixr.mmkin.Rd')
| -rw-r--r-- | man/nlmixr.mmkin.Rd | 24 |
1 files changed, 19 insertions, 5 deletions
diff --git a/man/nlmixr.mmkin.Rd b/man/nlmixr.mmkin.Rd index 86bbdc9f..4ab30272 100644 --- a/man/nlmixr.mmkin.Rd +++ b/man/nlmixr.mmkin.Rd @@ -29,7 +29,8 @@ nlmixr_model( degparms_start = "auto", test_log_parms = FALSE, conf.level = 0.6, - error_model = object[[1]]$err_mod + error_model = object[[1]]$err_mod, + add_attributes = FALSE ) nlmixr_data(object, ...) @@ -38,9 +39,16 @@ nlmixr_data(object, ...) \item{object}{An \link{mmkin} row object containing several fits of the same \link{mkinmod} model to different datasets} +\item{data}{Not used, as the data are extracted from the mmkin row object} + \item{est}{Estimation method passed to \link[nlmixr:nlmixr]{nlmixr::nlmixr}} -\item{control}{Passed to \link[nlmixr:nlmixr]{nlmixr::nlmixr}.} +\item{control}{Passed to \link[nlmixr:nlmixr]{nlmixr::nlmixr}} + +\item{table}{Passed to \link[nlmixr:nlmixr]{nlmixr::nlmixr}} + +\item{error_model}{Possibility to override the error model which is being +set based on the error model used in the mmkin row object.} \item{test_log_parms}{If TRUE, an attempt is made to use more robust starting values for population parameters fitted as log parameters in mkin (like @@ -52,6 +60,10 @@ for parameter that are tested if requested by 'test_log_parms'.} \item{\dots}{Passed to \link{nlmixr_model}} +\item{save}{Passed to \link[nlmixr:nlmixr]{nlmixr::nlmixr}} + +\item{envir}{Passed to \link[nlmixr:nlmixr]{nlmixr::nlmixr}} + \item{x}{An nlmixr.mmkin object to print} \item{digits}{Number of digits to use for printing} @@ -59,8 +71,9 @@ for parameter that are tested if requested by 'test_log_parms'.} \item{degparms_start}{Parameter values given as a named numeric vector will be used to override the starting values obtained from the 'mmkin' object.} -\item{solution_type}{Possibility to specify the solution type in case the -automatic choice is not desired} +\item{add_attributes}{Should the starting values used for degradation model +parameters and their distribution and for the error model parameters +be returned as attributes?} } \value{ An S3 object of class 'nlmixr.mmkin', containing the fitted @@ -81,9 +94,11 @@ An mmkin row object is essentially a list of mkinfit objects that have been obtained by fitting the same model to a list of datasets using \link{mkinfit}. } \examples{ +\dontrun{ ds <- lapply(experimental_data_for_UBA_2019[6:10], function(x) subset(x$data[c("name", "time", "value")])) names(ds) <- paste("Dataset", 6:10) + f_mmkin_parent <- mmkin(c("SFO", "FOMC", "DFOP", "HS"), ds, quiet = TRUE, cores = 1) f_mmkin_parent_tc <- mmkin(c("SFO", "FOMC", "DFOP"), ds, error_model = "tc", cores = 1, quiet = TRUE) @@ -117,7 +132,6 @@ AIC(nlme(f_mmkin_parent["HS", ])) # solution, the two-component error model does not improve it plot(f_nlmixr_fomc_saem) -\dontrun{ sfo_sfo <- mkinmod(parent = mkinsub("SFO", "A1"), A1 = mkinsub("SFO")) fomc_sfo <- mkinmod(parent = mkinsub("FOMC", "A1"), |