diff options
Diffstat (limited to 'man/plot.mixed.mmkin.Rd')
| -rw-r--r-- | man/plot.mixed.mmkin.Rd | 22 |
1 files changed, 19 insertions, 3 deletions
diff --git a/man/plot.mixed.mmkin.Rd b/man/plot.mixed.mmkin.Rd index 9c4474ff..1e264db3 100644 --- a/man/plot.mixed.mmkin.Rd +++ b/man/plot.mixed.mmkin.Rd @@ -9,10 +9,12 @@ i = 1:ncol(x$mmkin), obs_vars = names(x$mkinmod$map), standardized = TRUE, + covariates = NULL, + covariate_quantiles = c(0.5, 0.05, 0.95), xlab = "Time", xlim = range(x$data$time), resplot = c("predicted", "time"), - pop_curve = "auto", + pop_curves = "auto", pred_over = NULL, test_log_parms = FALSE, conf.level = 0.6, @@ -43,6 +45,16 @@ variables in the model.} \item{standardized}{Should the residuals be standardized? Only takes effect if \code{resplot = "time"}.} +\item{covariates}{Data frame with covariate values for all variables in +any covariate models in the object. If given, it overrides 'covariate_quantiles'. +Each line in the data frame will result in a line drawn for the population. +Rownames are used in the legend to label the lines.} + +\item{covariate_quantiles}{This argument only has an effect if the fitted +object has covariate models. If so, the default is to show three population +curves, for the 5th percentile, the 50th percentile and the 95th percentile +of the covariate values used for fitting the model.} + \item{xlab}{Label for the x axis.} \item{xlim}{Plot range in x direction.} @@ -50,9 +62,10 @@ variables in the model.} \item{resplot}{Should the residuals plotted against time or against predicted values?} -\item{pop_curve}{Per default, a population curve is drawn in case +\item{pop_curves}{Per default, one population curve is drawn in case population parameters are fitted by the model, e.g. for saem objects. -In case there is a covariate model, no population curve is currently shown.} +In case there is a covariate model, the behaviour depends on the value +of 'covariates'} \item{pred_over}{Named list of alternative predictions as obtained from \link{mkinpredict} with a compatible \link{mkinmod}.} @@ -96,6 +109,9 @@ The function is called for its side effect. \description{ Plot predictions from a fitted nonlinear mixed model obtained via an mmkin row object } +\note{ +Covariate models are currently only supported for saem.mmkin objects. +} \examples{ ds <- lapply(experimental_data_for_UBA_2019[6:10], function(x) x$data[c("name", "time", "value")]) |