diff options
Diffstat (limited to 'man/plot.mkinfit.Rd')
-rw-r--r-- | man/plot.mkinfit.Rd | 21 |
1 files changed, 17 insertions, 4 deletions
diff --git a/man/plot.mkinfit.Rd b/man/plot.mkinfit.Rd index 733cdf76..9514c5e5 100644 --- a/man/plot.mkinfit.Rd +++ b/man/plot.mkinfit.Rd @@ -10,7 +10,7 @@ the observed data together with the solution of the fitted model. If the current plot device is a \code{\link[tikzDevice]{tikz}} device, - then latex is being used for the formatting of the chi2 error level, + then latex is being used for the formatting of the chi2 error level, if \code{show_errmin = TRUE}. } \usage{ @@ -22,7 +22,9 @@ col_obs = 1:length(obs_vars), pch_obs = col_obs, lty_obs = rep(1, length(obs_vars)), add = FALSE, legend = !add, - show_residuals = FALSE, maxabs = "auto", + show_residuals = FALSE, + show_errplot = FALSE, + maxabs = "auto", sep_obs = FALSE, rel.height.middle = 0.9, lpos = "topright", inset = c(0.05, 0.05), show_errmin = FALSE, errmin_digits = 3, \dots) @@ -69,10 +71,16 @@ plot_sep(fit, sep_obs = TRUE, show_residuals = TRUE, show_errmin = TRUE, \dots) } \item{show_residuals}{ Should residuals be shown? If only one plot of the fits is shown, the - residual plot is in the lower third of the plot? Otherwise, i.e. if + residual plot is in the lower third of the plot. Otherwise, i.e. if "sep_obs" is given, the residual plots will be located to the right of the plots of the fitted curves. } + \item{show_errplot}{ + Should squared residuals and the error model be shown? If only one plot of + the fits is shown, this plot is in the lower third of the plot. + Otherwise, i.e. if "sep_obs" is given, the residual plots will be located + to the right of the plots of the fitted curves. + } \item{maxabs}{ Maximum absolute value of the residuals. This is used for the scaling of the y axis and defaults to "auto". @@ -109,9 +117,10 @@ plot_sep(fit, sep_obs = TRUE, show_residuals = TRUE, show_errmin = TRUE, \dots) # parent to sink included SFO_SFO <- mkinmod(parent = mkinsub("SFO", "m1", full = "Parent"), m1 = mkinsub("SFO", full = "Metabolite M1" )) -fit <- mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE) +fit <- mkinfit(SFO_SFO, FOCUS_2006_D, quiet = TRUE, error_model = "tc") plot(fit) plot(fit, show_residuals = TRUE) +plot(fit, show_errplot = TRUE) # Show the observed variables separately plot(fit, sep_obs = TRUE, lpos = c("topright", "bottomright")) @@ -122,6 +131,10 @@ plot(fit, sep_obs = TRUE, show_residuals = TRUE, lpos = c("topright", "bottomrig # The same can be obtained with less typing, using the convenience function plot_sep plot_sep(fit, lpos = c("topright", "bottomright")) + +# Show the observed variables separately, with the error model +plot(fit, sep_obs = TRUE, show_errplot = TRUE, lpos = c("topright", "bottomright"), + show_errmin = TRUE) } \author{ Johannes Ranke |