diff options
Diffstat (limited to 'man/summary.nlmixr.mmkin.Rd')
-rw-r--r-- | man/summary.nlmixr.mmkin.Rd | 17 |
1 files changed, 10 insertions, 7 deletions
diff --git a/man/summary.nlmixr.mmkin.Rd b/man/summary.nlmixr.mmkin.Rd index 03f0ffb2..ab8abd5d 100644 --- a/man/summary.nlmixr.mmkin.Rd +++ b/man/summary.nlmixr.mmkin.Rd @@ -2,12 +2,15 @@ % Please edit documentation in R/summary.nlmixr.mmkin.R \name{summary.nlmixr.mmkin} \alias{summary.nlmixr.mmkin} +\alias{print.summary.nlmixr.mmkin} \title{Summary method for class "nlmixr.mmkin"} \usage{ \method{summary}{nlmixr.mmkin}(object, data = FALSE, verbose = FALSE, distimes = TRUE, ...) + +\method{print}{summary.nlmixr.mmkin}(x, digits = max(3, getOption("digits") - 3), verbose = x$verbose, ...) } \arguments{ -\item{object}{an object of class \link{nlmix.mmkin}} +\item{object}{an object of class \link{nlmixr.mmkin}} \item{data}{logical, indicating whether the full data should be included in the summary.} @@ -19,7 +22,7 @@ included.} \item{\dots}{optional arguments passed to methods like \code{print}.} -\item{x}{an object of class \link{summary.nlmix.mmkin}} +\item{x}{an object of class \link{summary.nlmixr.mmkin}} \item{digits}{Number of digits to use for printing} } @@ -32,9 +35,7 @@ produced} \item{diffs}{The differential equations used in the degradation model} \item{use_of_ff}{Was maximum or minimum use made of formation fractions} \item{data}{The data} -\item{confint_trans}{Transformed parameters as used in the optimisation, with confidence intervals} \item{confint_back}{Backtransformed parameters, with confidence intervals if available} -\item{confint_errmod}{Error model parameters with confidence intervals} \item{ff}{The estimated formation fractions derived from the fitted model.} \item{distimes}{The DT50 and DT90 values for each observed variable.} @@ -85,12 +86,14 @@ ds_syn_dfop_sfo <- lapply(ds_mean_dfop_sfo, function(ds) { \dontrun{ # Evaluate using mmkin and nlmixr f_mmkin_dfop_sfo <- mmkin(list(dfop_sfo), ds_syn_dfop_sfo, - quiet = TRUE, error_model = "obs", cores = 5) + quiet = TRUE, error_model = "tc", cores = 5) f_saemix_dfop_sfo <- mkin::saem(f_mmkin_dfop_sfo) f_nlme_dfop_sfo <- mkin::nlme(f_mmkin_dfop_sfo) f_nlmixr_dfop_sfo_saem <- nlmixr(f_mmkin_dfop_sfo, est = "saem") -#f_nlmixr_dfop_sfo_focei <- nlmixr(f_mmkin_dfop_sfo, est = "focei") -summary(f_nlmixr_dfop_sfo, data = TRUE) +# The following takes a very long time but gives +f_nlmixr_dfop_sfo_focei <- nlmixr(f_mmkin_dfop_sfo, est = "focei") +AIC(f_nlmixr_dfop_sfo_saem$nm, f_nlmixr_dfop_sfo_focei$nm) +summary(f_nlmixr_dfop_sfo_sfo, data = TRUE) } } |