diff options
Diffstat (limited to 'man')
| -rw-r--r-- | man/mkinfit.Rd | 3 | ||||
| -rw-r--r-- | man/multistart.Rd | 4 | ||||
| -rw-r--r-- | man/plot.mixed.mmkin.Rd | 2 |
3 files changed, 5 insertions, 4 deletions
diff --git a/man/mkinfit.Rd b/man/mkinfit.Rd index f96b4d22..edec9546 100644 --- a/man/mkinfit.Rd +++ b/man/mkinfit.Rd @@ -39,7 +39,8 @@ model to be fitted to the data, or one of the shorthand names ("SFO", parent only degradation model is generated for the variable with the highest value in \code{observed}.} -\item{observed}{A dataframe with the observed data. The first column called +\item{observed}{A dataframe or an object coercible to a dataframe +(e.g. a \code{tibble}) with the observed data. The first column called "name" must contain the name of the observed variable for each data point. The second column must contain the times of observation, named "time". The third column must be named "value" and contain the observed values. diff --git a/man/multistart.Rd b/man/multistart.Rd index 0df29bfa..d3c23bcf 100644 --- a/man/multistart.Rd +++ b/man/multistart.Rd @@ -77,7 +77,7 @@ dmta_ds[["Elliot 1"]] <- dmta_ds[["Elliot 2"]] <- NULL f_mmkin <- mmkin("DFOP", dmta_ds, error_model = "tc", cores = 7, quiet = TRUE) f_saem_full <- saem(f_mmkin) f_saem_full_multi <- multistart(f_saem_full, n = 16, cores = 16) -parplot(f_saem_full_multi, lpos = "topleft") +parplot(f_saem_full_multi, lpos = "topleft", las = 2) illparms(f_saem_full) f_saem_reduced <- update(f_saem_full, no_random_effect = "log_k2") @@ -87,7 +87,7 @@ illparms(f_saem_reduced) library(parallel) cl <- makePSOCKcluster(12) f_saem_reduced_multi <- multistart(f_saem_reduced, n = 16, cluster = cl) -parplot(f_saem_reduced_multi, lpos = "topright", ylim = c(0.5, 2)) +parplot(f_saem_reduced_multi, lpos = "topright", ylim = c(0.5, 2), las = 2) stopCluster(cl) } } diff --git a/man/plot.mixed.mmkin.Rd b/man/plot.mixed.mmkin.Rd index 1e264db3..3c44510d 100644 --- a/man/plot.mixed.mmkin.Rd +++ b/man/plot.mixed.mmkin.Rd @@ -25,7 +25,7 @@ nrow.legend = ceiling((length(i) + 1)/ncol.legend), rel.height.legend = 0.02 + 0.07 * nrow.legend, rel.height.bottom = 1.1, - pch_ds = 1:length(i), + pch_ds = c(1:25, 33, 35:38, 40:41, 47:57, 60:90)[1:length(i)], col_ds = pch_ds + 1, lty_ds = col_ds, frame = TRUE, |