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-rw-r--r-- | man/saemix.Rd | 54 |
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diff --git a/man/saemix.Rd b/man/saemix.Rd deleted file mode 100644 index eedbf537..00000000 --- a/man/saemix.Rd +++ /dev/null @@ -1,54 +0,0 @@ -% Generated by roxygen2: do not edit by hand -% Please edit documentation in R/saemix.R -\name{saemix_model} -\alias{saemix_model} -\alias{saemix_data} -\title{Create saemix models from mmkin row objects} -\usage{ -saemix_model(object, cores = parallel::detectCores()) - -saemix_data(object, ...) -} -\arguments{ -\item{object}{An mmkin row object containing several fits of the same model to different datasets} - -\item{cores}{The number of cores to be used for multicore processing. -On Windows machines, cores > 1 is currently not supported.} - -\item{\dots}{Further parameters passed to \link[saemix:saemixData]{saemix::saemixData}} -} -\value{ -An \link[saemix:SaemixModel-class]{saemix::SaemixModel} object. - -An \link[saemix:SaemixData-class]{saemix::SaemixData} object. -} -\description{ -This function sets up a nonlinear mixed effects model for an mmkin row -object for use with the saemix package. An mmkin row object is essentially a -list of mkinfit objects that have been obtained by fitting the same model to -a list of datasets. -} -\details{ -Starting values for the fixed effects (population mean parameters, argument psi0 of -\code{\link[saemix:saemixModel]{saemix::saemixModel()}} are the mean values of the parameters found using -mmkin. Starting variances of the random effects (argument omega.init) are the -variances of the deviations of the parameters from these mean values. -} -\examples{ -ds <- lapply(experimental_data_for_UBA_2019[6:10], - function(x) subset(x$data[c("name", "time", "value")])) -names(ds) <- paste("Dataset", 6:10) -sfo_sfo <- mkinmod(parent = mkinsub("SFO", "A1"), - A1 = mkinsub("SFO")) -\dontrun{ -f_mmkin <- mmkin(list("SFO-SFO" = sfo_sfo), ds, quiet = TRUE) -library(saemix) -m_saemix <- saemix_model(f_mmkin) -d_saemix <- saemix_data(f_mmkin) -saemix_options <- list(seed = 123456, - save = FALSE, save.graphs = FALSE, displayProgress = FALSE, - nbiter.saemix = c(200, 80)) -f_saemix <- saemix(m_saemix, d_saemix, saemix_options) -plot(f_saemix, plot.type = "convergence") -} -} |