diff options
Diffstat (limited to 'man')
| -rw-r--r-- | man/mkinpredict.Rd | 13 |
1 files changed, 5 insertions, 8 deletions
diff --git a/man/mkinpredict.Rd b/man/mkinpredict.Rd index 1ba5b5f8..2c9192b7 100644 --- a/man/mkinpredict.Rd +++ b/man/mkinpredict.Rd @@ -85,13 +85,14 @@ is 1e-10, much lower than in \code{\link{lsoda}}.} \item{map_output}{Boolean to specify if the output should list values for the observed variables (default) or for all state variables (if set to -FALSE).} +FALSE). Setting this to FALSE has no effect for analytical solutions, +as these always return mapped output.} \item{\dots}{Further arguments passed to the ode solver in case such a solver is used.} } \value{ -A data frame with the solution in wide format +A matrix with the numeric solution in wide format } \description{ This function produces a time series for all the observed variables in a @@ -129,7 +130,7 @@ mkinpredict(SFO, c(k_degradinol = 0.3), c(degradinol = 100), mkinpredict(SFO, c(k_degradinol = 0.3), c(degradinol = 100), seq(0, 20, by = 0.01))[2001,] -# Check compiled model versions - they are faster than the eigenvalue based solutions! +# Comparison of the performance of solution types SFO_SFO = mkinmod(parent = list(type = "SFO", to = "m1"), m1 = list(type = "SFO"), use_of_ff = "max") if(require(rbenchmark)) { @@ -151,15 +152,11 @@ if(require(rbenchmark)) { c(parent = 100, m1 = 0), seq(0, 20, by = 0.1), solution_type = "analytical", use_compiled = FALSE)[201,]) } - analytical = mkinpredict(SFO_SFO, - c(k_parent = 0.15, f_parent_to_m1 = 0.5, k_m1 = 0.01), - c(parent = 100, m1 = 0), seq(0, 20, by = 0.1), - solution_type = "analytical", use_compiled = FALSE)[201,] \dontrun{ # Predict from a fitted model f <- mkinfit(SFO_SFO, FOCUS_2006_C, quiet = TRUE) - f <- mkinfit(SFO_SFO, FOCUS_2006_C, quiet = TRUE, solution_type = "analytical") + f <- mkinfit(SFO_SFO, FOCUS_2006_C, quiet = TRUE, solution_type = "deSolve") head(mkinpredict(f)) } |