diff options
Diffstat (limited to 'test.log')
| -rw-r--r-- | test.log | 28 |
1 files changed, 17 insertions, 11 deletions
@@ -3,45 +3,51 @@ Loading required package: parallel ℹ Testing mkin ✔ | F W S OK | Context ✔ | 5 | AIC calculation -✔ | 5 | Analytical solutions for coupled models [3.4s] +✔ | 5 | Analytical solutions for coupled models [4.3s] ✔ | 5 | Calculation of Akaike weights ✔ | 2 | Export dataset for reading into CAKE -✔ | 12 | Confidence intervals and p-values [1.0s] +✔ | 12 | Confidence intervals and p-values [1.1s] ⠋ | 1 | Dimethenamid data from 2018 -✔ | 24 | Dimethenamid data from 2018 [37.1s] -✔ | 14 | Error model fitting [6.8s] +✔ | 1 25 | Dimethenamid data from 2018 [49.7s] +──────────────────────────────────────────────────────────────────────────────── +Skip (test_dmta.R:147:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data +Reason: Fitting this ODE model with saemix takes about 15 minutes on my system +──────────────────────────────────────────────────────────────────────────────── +✔ | 14 | Error model fitting [7.0s] ✔ | 5 | Time step normalisation ✔ | 4 | Calculation of FOCUS chi2 error levels [0.8s] ✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [1.1s] ✔ | 4 | Test fitting the decline of metabolites from their maximum [0.5s] ✔ | 1 | Fitting the logistic model [0.3s] -✔ | 1 12 | Nonlinear mixed-effects models [0.2s] +⠴ | 6 | Nonlinear mixed-effects models +✔ | 1 15 | Nonlinear mixed-effects models [2.4s] ──────────────────────────────────────────────────────────────────────────────── Skip (test_mixed.R:67:3): saemix results are reproducible for biphasic fits Reason: Fitting with saemix takes around 10 minutes when using deSolve ──────────────────────────────────────────────────────────────────────────────── -✔ | 2 | Test dataset classes mkinds and mkindsg +✔ | 3 | Test dataset classes mkinds and mkindsg ✔ | 10 | Special cases of mkinfit calls [0.6s] ✔ | 1 | mkinfit features [0.5s] ✔ | 8 | mkinmod model generation and printing [0.2s] ✔ | 3 | Model predictions with mkinpredict [0.4s] ✔ | 16 | Evaluations according to 2015 NAFTA guidance [2.1s] -✔ | 9 | Nonlinear mixed-effects models with nlme [9.0s] +✔ | 9 | Nonlinear mixed-effects models with nlme [9.2s] ✔ | 16 | Plotting [1.5s] ✔ | 4 | Residuals extracted from mkinfit models -✔ | 23 | saemix_parent [29.0s] +✔ | 23 | saemix_parent [30.4s] ✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.6s] ✔ | 7 | Fitting the SFORB model [4.5s] ✔ | 1 | Summaries of old mkinfit objects ✔ | 4 | Summary [0.1s] -✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.5s] +✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.6s] ✔ | 9 | Hypothesis tests [9.4s] ✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 115.2 s +Duration: 133.2 s ── Skipped tests ────────────────────────────────────────────────────────────── +• Fitting this ODE model with saemix takes about 15 minutes on my system (1) • Fitting with saemix takes around 10 minutes when using deSolve (1) -[ FAIL 0 | WARN 0 | SKIP 1 | PASS 230 ] +[ FAIL 0 | WARN 0 | SKIP 2 | PASS 235 ] |