diff options
Diffstat (limited to 'test.log')
| -rw-r--r-- | test.log | 53 |
1 files changed, 37 insertions, 16 deletions
@@ -3,35 +3,56 @@ Loading required package: parallel ℹ Testing mkin ✔ | OK F W S | Context ✔ | 5 | AIC calculation -✔ | 5 | Analytical solutions for coupled models [3.1 s] +✔ | 5 | Analytical solutions for coupled models [3.4 s] ✔ | 5 | Calculation of Akaike weights ✔ | 2 | Export dataset for reading into CAKE -✔ | 12 | Confidence intervals and p-values [1.3 s] -✔ | 14 | Error model fitting [4.2 s] +✔ | 12 | Confidence intervals and p-values [1.1 s] +✔ | 14 | Error model fitting [4.8 s] ✔ | 5 | Time step normalisation -✔ | 4 | Calculation of FOCUS chi2 error levels [0.5 s] -✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.7 s] +✔ | 4 | Calculation of FOCUS chi2 error levels [0.6 s] +✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8 s] ✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3 s] ✔ | 1 | Fitting the logistic model [0.2 s] -✔ | 5 | Nonlinear mixed-effects models [0.1 s] +✔ | 35 1 | Nonlinear mixed-effects models [27.8 s] +──────────────────────────────────────────────────────────────────────────────── +Skip (test_mixed.R:161:3): saem results are reproducible for biphasic fits +Reason: Fitting with saemix takes around 10 minutes when using deSolve +──────────────────────────────────────────────────────────────────────────────── ✔ | 2 | Test dataset classes mkinds and mkindsg -✔ | 10 | Special cases of mkinfit calls [0.3 s] +✔ | 10 | Special cases of mkinfit calls [0.4 s] ✔ | 1 | mkinfit features [0.3 s] ✔ | 8 | mkinmod model generation and printing [0.2 s] ✔ | 3 | Model predictions with mkinpredict [0.3 s] -✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.4 s] -✔ | 9 | Nonlinear mixed-effects models [7.9 s] -✔ | 14 | Plotting [1.1 s] +✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.5 s] +✔ | 9 | Nonlinear mixed-effects models with nlme [8.2 s] +✖ | 15 1 2 | Plotting [1.3 s] +──────────────────────────────────────────────────────────────────────────────── +Warning (test_plot.R:38:5): Plotting mkinfit, mmkin and mixed model objects is reproducible +Adding new file snapshot: '_snaps/plot/mixed-model-fit-for-saem-object-with-saemix-transformations.svg' + +Failure (test_plot.R:44:3): Plotting mkinfit, mmkin and mixed model objects is reproducible +Snapshot of `testcase` to 'plot/mixed-model-fit-for-nlme-object.svg' has changed +Run `testthat::snapshot_review('plot')` to review changes +Backtrace: + 1. vdiffr::expect_doppelganger(...) test_plot.R:44:2 + 3. testthat::expect_snapshot_file(...) + +Warning (test_plot.R:53:5): Plotting mkinfit, mmkin and mixed model objects is reproducible +Adding new file snapshot: '_snaps/plot/mixed-model-fit-for-saem-object-with-mkin-transformations.svg' +──────────────────────────────────────────────────────────────────────────────── ✔ | 4 | Residuals extracted from mkinfit models ✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5 s] -✔ | 7 | Fitting the SFORB model [3.7 s] +✔ | 7 | Fitting the SFORB model [3.9 s] ✔ | 1 | Summaries of old mkinfit objects ✔ | 4 | Summary [0.1 s] -✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2 s] -✔ | 9 | Hypothesis tests [8.0 s] -✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.4 s] +✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.3 s] +✔ | 9 | Hypothesis tests [8.6 s] +✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2 s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 40.3 s +Duration: 70.3 s + +── Skipped tests ────────────────────────────────────────────────────────────── +• Fitting with saemix takes around 10 minutes when using deSolve (1) -[ FAIL 0 | WARN 0 | SKIP 0 | PASS 174 ] +[ FAIL 1 | WARN 2 | SKIP 1 | PASS 205 ] |