diff options
Diffstat (limited to 'test.log')
| -rw-r--r-- | test.log | 43 |
1 files changed, 25 insertions, 18 deletions
@@ -1,27 +1,33 @@ -Loading mkin +ℹ Loading mkin Loading required package: parallel -Testing mkin +ℹ Testing mkin ✔ | OK F W S | Context ✔ | 5 | AIC calculation -✔ | 2 | Export dataset for reading into CAKE -✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [1.0 s] -✔ | 4 | Calculation of FOCUS chi2 error levels [0.5 s] -✔ | 7 | Fitting the SFORB model [3.5 s] -✔ | 5 | Analytical solutions for coupled models [3.1 s] +✔ | 5 | Analytical solutions for coupled models [3.2 s] ✔ | 5 | Calculation of Akaike weights -✔ | 12 | Confidence intervals and p-values [1.0 s] -✔ | 14 | Error model fitting [4.2 s] +✔ | 2 | Export dataset for reading into CAKE +✔ | 12 | Confidence intervals and p-values [1.3 s] +✔ | 14 | Error model fitting [4.3 s] ✔ | 5 | Time step normalisation +✔ | 4 | Calculation of FOCUS chi2 error levels [0.5 s] +✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.7 s] ✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3 s] ✔ | 1 | Fitting the logistic model [0.2 s] ✔ | 5 | Nonlinear mixed-effects models [0.1 s] ✔ | 2 | Test dataset classes mkinds and mkindsg -✔ | 1 | mkinfit features [0.3 s] ✔ | 10 | Special cases of mkinfit calls [0.3 s] +✔ | 1 | mkinfit features [0.3 s] ✔ | 8 | mkinmod model generation and printing [0.2 s] -✔ | 3 | Model predictions with mkinpredict [0.4 s] -✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.6 s] -✔ | 9 | Nonlinear mixed-effects models [7.9 s] +✔ | 3 | Model predictions with mkinpredict [0.3 s] +✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.7 s] +✖ | 7 1 | Nonlinear mixed-effects models [1.9 s] +──────────────────────────────────────────────────────────────────────────────── +Error (test_nlme.R:116:3): nlme_function works correctly in other cases +Error: unused argument ("sysname") +Backtrace: + 1. mkin::mmkin("SFO", ds_me_sfo_5, quiet = TRUE) test_nlme.R:116:2 + 2. parallel::mclapply(...) /home/jranke/git/mkin/R/mmkin.R:118:4 +──────────────────────────────────────────────────────────────────────────────── ✖ | 10 4 | Plotting [1.7 s] ──────────────────────────────────────────────────────────────────────────────── Failure (test_plot.R:20:3): Plotting mkinfit, mmkin and mixed model objects is reproducible @@ -42,13 +48,14 @@ Figures don't match: plot-res-for-focus-d.svg ──────────────────────────────────────────────────────────────────────────────── ✔ | 4 | Residuals extracted from mkinfit models ✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5 s] -✔ | 4 | Summary [0.1 s] +✔ | 7 | Fitting the SFORB model [3.6 s] ✔ | 1 | Summaries of old mkinfit objects +✔ | 4 | Summary [0.1 s] ✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2 s] -✔ | 9 | Hypothesis tests [8.3 s] -✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.5 s] +✔ | 9 | Hypothesis tests [8.1 s] +✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.4 s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 41.0 s +Duration: 35.2 s -[ FAIL 4 | WARN 0 | SKIP 0 | PASS 170 ] +[ FAIL 5 | WARN 0 | SKIP 0 | PASS 168 ] |