diff options
Diffstat (limited to 'test.log')
| -rw-r--r-- | test.log | 54 |
1 files changed, 23 insertions, 31 deletions
@@ -3,59 +3,51 @@ Loading required package: parallel ℹ Testing mkin ✔ | OK F W S | Context ✔ | 5 | AIC calculation -✔ | 5 | Analytical solutions for coupled models [3.2 s] +✔ | 5 | Analytical solutions for coupled models [3.3 s] ✔ | 5 | Calculation of Akaike weights ✔ | 2 | Export dataset for reading into CAKE ✔ | 12 | Confidence intervals and p-values [1.3 s] -✔ | 14 | Error model fitting [4.3 s] +✔ | 14 | Error model fitting [4.7 s] ✔ | 5 | Time step normalisation ✔ | 4 | Calculation of FOCUS chi2 error levels [0.5 s] -✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.7 s] +✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8 s] ✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3 s] ✔ | 1 | Fitting the logistic model [0.2 s] -✔ | 5 | Nonlinear mixed-effects models [0.1 s] +✔ | 35 1 | Nonlinear mixed-effects models [27.1 s] +──────────────────────────────────────────────────────────────────────────────── +Skip (test_mixed.R:161:3): saem results are reproducible for biphasic fits +Reason: Fitting with saemix takes around 10 minutes when using deSolve +──────────────────────────────────────────────────────────────────────────────── ✔ | 2 | Test dataset classes mkinds and mkindsg -✔ | 10 | Special cases of mkinfit calls [0.3 s] +✔ | 10 | Special cases of mkinfit calls [0.4 s] ✔ | 1 | mkinfit features [0.3 s] -✔ | 8 | mkinmod model generation and printing [0.2 s] +✔ | 8 | mkinmod model generation and printing [0.3 s] ✔ | 3 | Model predictions with mkinpredict [0.3 s] ✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.7 s] -✖ | 7 1 | Nonlinear mixed-effects models [1.9 s] -──────────────────────────────────────────────────────────────────────────────── -Error (test_nlme.R:116:3): nlme_function works correctly in other cases -Error: unused argument ("sysname") -Backtrace: - 1. mkin::mmkin("SFO", ds_me_sfo_5, quiet = TRUE) test_nlme.R:116:2 - 2. parallel::mclapply(...) /home/jranke/git/mkin/R/mmkin.R:118:4 +✔ | 9 | Nonlinear mixed-effects models with nlme [8.1 s] +✖ | 14 2 | Plotting [1.9 s] ──────────────────────────────────────────────────────────────────────────────── -✖ | 10 4 | Plotting [1.7 s] -──────────────────────────────────────────────────────────────────────────────── -Failure (test_plot.R:20:3): Plotting mkinfit, mmkin and mixed model objects is reproducible -Figures don't match: mkinfit-plot-for-focus-c-with-residuals-like-in-gmkin.svg - +Failure (test_plot.R:40:5): Plotting mkinfit, mmkin and mixed model objects is reproducible +Figures don't match: mixed-model-fit-for-saem-object-with-saemix-transformations.svg -Failure (test_plot.R:21:3): Plotting mkinfit, mmkin and mixed model objects is reproducible -Figures don't match: plot-res-for-focus-c.svg - -Failure (test_plot.R:22:3): Plotting mkinfit, mmkin and mixed model objects is reproducible -Figures don't match: mkinfit-plot-for-focus-c-with-sep-true.svg - - -Failure (test_plot.R:30:3): Plotting mkinfit, mmkin and mixed model objects is reproducible -Figures don't match: plot-res-for-focus-d.svg +Failure (test_plot.R:55:5): Plotting mkinfit, mmkin and mixed model objects is reproducible +Figures don't match: mixed-model-fit-for-saem-object-with-mkin-transformations.svg ──────────────────────────────────────────────────────────────────────────────── ✔ | 4 | Residuals extracted from mkinfit models ✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5 s] -✔ | 7 | Fitting the SFORB model [3.6 s] +✔ | 7 | Fitting the SFORB model [3.9 s] ✔ | 1 | Summaries of old mkinfit objects ✔ | 4 | Summary [0.1 s] ✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2 s] -✔ | 9 | Hypothesis tests [8.1 s] +✔ | 9 | Hypothesis tests [8.2 s] ✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.4 s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 35.2 s +Duration: 70.0 s + +── Skipped tests ────────────────────────────────────────────────────────────── +● Fitting with saemix takes around 10 minutes when using deSolve (1) -[ FAIL 5 | WARN 0 | SKIP 0 | PASS 168 ] +[ FAIL 2 | WARN 0 | SKIP 1 | PASS 204 ] |